Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.12■□□□□ 0.17
LMX1BO60663 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.12■□□□□ 0.17
LMX1BO60663 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 UPK3BP1-201ENST00000428678 509 ntBASIC16.12■□□□□ 0.17
LMX1BO60663 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
LMX1BO60663 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.12■□□□□ 0.17
LMX1BO60663 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LMX1BO60663 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.12■□□□□ 0.17
LMX1BO60663 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
LMX1BO60663 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LMX1BO60663 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
LMX1BO60663 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.11■□□□□ 0.17
LMX1BO60663 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 HMGA1P5-201ENST00000412453 271 ntBASIC16.11■□□□□ 0.17
LMX1BO60663 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 AC063952.2-201ENST00000498792 1227 ntBASIC16.11■□□□□ 0.17
LMX1BO60663 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.11■□□□□ 0.17
LMX1BO60663 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.11■□□□□ 0.17
LMX1BO60663 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.11■□□□□ 0.17
LMX1BO60663 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 AP000997.3-201ENST00000623333 2250 ntBASIC16.11■□□□□ 0.17
LMX1BO60663 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1BO60663 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1BO60663 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1BO60663 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.1■□□□□ 0.17
LMX1BO60663 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.1■□□□□ 0.17
LMX1BO60663 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.1■□□□□ 0.17
LMX1BO60663 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LMX1BO60663 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1BO60663 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1BO60663 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.1■□□□□ 0.17
LMX1BO60663 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
LMX1BO60663 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.1■□□□□ 0.17
LMX1BO60663 MYC-208ENST00000641036 567 ntBASIC16.1■□□□□ 0.17
LMX1BO60663 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.1■□□□□ 0.17
LMX1BO60663 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1BO60663 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1BO60663 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms