Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 LINC02560-201ENST00000596379 459 ntBASIC14.13□□□□□ -0.15
COL6A5A8TX70 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 AC010336.2-201ENST00000564226 506 ntBASIC14.12□□□□□ -0.15
COL6A5A8TX70 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.12□□□□□ -0.15
COL6A5A8TX70 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 GOLGA2P11-201ENST00000562660 1621 ntBASIC14.12□□□□□ -0.15
COL6A5A8TX70 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A5A8TX70 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A5A8TX70 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 SLC25A6P5-201ENST00000435663 894 ntBASIC14.11□□□□□ -0.15
COL6A5A8TX70 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 PARP8-218ENST00000513738 596 ntTSL 4 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 AC067863.1-201ENST00000494933 530 ntBASIC14.11□□□□□ -0.15
COL6A5A8TX70 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A5A8TX70 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms