Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 AL353719.1-201ENST00000566847 864 ntBASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHA3Q9Y5H8 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 SLC25A1P2-201ENST00000430693 912 ntBASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 AP003041.3-201ENST00000527151 707 ntBASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 WWOX-216ENST00000569818 525 ntBASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 Z99916.2-201ENST00000604037 246 ntBASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
PCDHA3Q9Y5H8 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 KRT18P23-201ENST00000435622 1283 ntBASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 TSPY17P-201ENST00000450329 467 ntBASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 AP003071.4-201ENST00000562276 1284 ntBASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
PCDHA3Q9Y5H8 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 CR769767.2-201ENST00000622735 460 ntBASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHA3Q9Y5H8 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
PCDHA3Q9Y5H8 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.14■□□□□ 0.66
PCDHA3Q9Y5H8 AC093010.1-201ENST00000473625 1624 ntBASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms