Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 AL158047.1-201ENST00000445918 881 ntBASIC16.82■□□□□ 0.28
DDX28Q9NUL7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 AC233263.1-201ENST00000578059 224 ntBASIC16.82■□□□□ 0.28
DDX28Q9NUL7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 AC142381.4-202ENST00000563973 229 ntBASIC16.81■□□□□ 0.28
DDX28Q9NUL7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
DDX28Q9NUL7 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 FP475955.4-201ENST00000623131 1990 ntBASIC16.8■□□□□ 0.28
DDX28Q9NUL7 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.8■□□□□ 0.28
DDX28Q9NUL7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
DDX28Q9NUL7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms