Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 IRS3P-201ENST00000223076 1006 ntBASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
VCX3AQ9NNX9 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 AC008741.2-201ENST00000612792 3115 ntBASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCX3AQ9NNX9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
VCX3AQ9NNX9 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 RARRES2P1-201ENST00000474487 481 ntBASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms