Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 AP003733.1-201ENST00000491725 852 ntBASIC21.6■■□□□ 1.05
RNF41Q9H4P4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 ESPNP-201ENST00000270691 2015 ntBASIC21.6■■□□□ 1.05
RNF41Q9H4P4 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF41Q9H4P4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 AC113404.2-201ENST00000507884 177 ntBASIC21.59■■□□□ 1.05
RNF41Q9H4P4 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 AC091076.1-201ENST00000610741 619 ntBASIC21.59■■□□□ 1.05
RNF41Q9H4P4 AC116407.4-201ENST00000623319 1061 ntBASIC21.59■■□□□ 1.05
RNF41Q9H4P4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 AP000550.4-202ENST00000639755 178 ntBASIC21.59■■□□□ 1.05
RNF41Q9H4P4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF41Q9H4P4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.58■■□□□ 1.05
RNF41Q9H4P4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 AL358472.4-201ENST00000633140 710 ntBASIC21.58■■□□□ 1.05
RNF41Q9H4P4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.58■■□□□ 1.05
RNF41Q9H4P4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
RNF41Q9H4P4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
RNF41Q9H4P4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
RNF41Q9H4P4 IER3-202ENST00000376377 1350 ntBASIC21.58■■□□□ 1.04
RNF41Q9H4P4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RNF41Q9H4P4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
RNF41Q9H4P4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
RNF41Q9H4P4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
RNF41Q9H4P4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
RNF41Q9H4P4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RNF41Q9H4P4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNF41Q9H4P4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RNF41Q9H4P4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.57■■□□□ 1.04
RNF41Q9H4P4 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNF41Q9H4P4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.57■■□□□ 1.04
RNF41Q9H4P4 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms