Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
UPF3BQ9BZI7 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
UPF3BQ9BZI7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
UPF3BQ9BZI7 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
UPF3BQ9BZI7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
UPF3BQ9BZI7 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.9■■□□□ 1.1
UPF3BQ9BZI7 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
UPF3BQ9BZI7 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
UPF3BQ9BZI7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.89■■□□□ 1.1
UPF3BQ9BZI7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.89■■□□□ 1.1
UPF3BQ9BZI7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
UPF3BQ9BZI7 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
UPF3BQ9BZI7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.89■■□□□ 1.1
UPF3BQ9BZI7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
UPF3BQ9BZI7 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 KRT8P9-201ENST00000558927 1449 ntBASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
UPF3BQ9BZI7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 PHGDH-209ENST00000641074 1780 ntBASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 AL096828.2-201ENST00000567259 1965 ntBASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPF3BQ9BZI7 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 AL163051.1-201ENST00000569214 1512 ntBASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 AC007663.1-201ENST00000438948 1240 ntBASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 TSPY17P-201ENST00000450329 467 ntBASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 AC133561.5-201ENST00000635547 218 ntBASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 AC138028.4-201ENST00000564984 1845 ntBASIC21.87■■□□□ 1.09
UPF3BQ9BZI7 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.86■■□□□ 1.09
UPF3BQ9BZI7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms