Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 AC008040.2-201ENST00000461049 708 ntBASIC16.03■□□□□ 0.16
NKX3-1Q99801 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX3-1Q99801 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 RPPH1-201ENST00000516869 333 ntBASIC16.02■□□□□ 0.16
NKX3-1Q99801 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 SPIB-206ENST00000596074 847 ntTSL 2 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 AL445675.2-201ENST00000620291 557 ntBASIC16.02■□□□□ 0.16
NKX3-1Q99801 AL359736.2-201ENST00000621992 437 ntBASIC16.02■□□□□ 0.16
NKX3-1Q99801 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.02■□□□□ 0.16
NKX3-1Q99801 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.02■□□□□ 0.15
NKX3-1Q99801 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
NKX3-1Q99801 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
NKX3-1Q99801 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
NKX3-1Q99801 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
NKX3-1Q99801 KRT8P3-201ENST00000519669 1449 ntBASIC16.02■□□□□ 0.15
NKX3-1Q99801 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NKX3-1Q99801 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NKX3-1Q99801 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 NIFKP9-201ENST00000419265 221 ntBASIC16.01■□□□□ 0.15
NKX3-1Q99801 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
NKX3-1Q99801 AC131212.4-201ENST00000623606 975 ntBASIC16.01■□□□□ 0.15
NKX3-1Q99801 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX3-1Q99801 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms