Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 AL135905.2-201ENST00000584934 1404 ntBASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 SLC25A1P4-201ENST00000567977 778 ntBASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 MIR4674-201ENST00000582457 87 ntBASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 MIR4651-201ENST00000582622 73 ntBASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 AC093010.1-201ENST00000473625 1624 ntBASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 NUDT16P1-203ENST00000513809 620 ntBASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRIF1Q5T3J3 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 KRT18P55-202ENST00000578578 1546 ntBASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.29■□□□□ 0.36
LRIF1Q5T3J3 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms