Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.8□□□□□ -0.04
CX3CL1P78423 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CX3CL1P78423 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CX3CL1P78423 WIZP1-201ENST00000531444 2299 ntBASIC14.8□□□□□ -0.04
CX3CL1P78423 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CX3CL1P78423 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CX3CL1P78423 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CX3CL1P78423 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CX3CL1P78423 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CX3CL1P78423 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC14.79□□□□□ -0.04
CX3CL1P78423 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CX3CL1P78423 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.79□□□□□ -0.04
CX3CL1P78423 PHB2-202ENST00000440277 996 ntTSL 5 BASIC14.79□□□□□ -0.04
CX3CL1P78423 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC14.79□□□□□ -0.04
CX3CL1P78423 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.79□□□□□ -0.04
CX3CL1P78423 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC14.79□□□□□ -0.04
CX3CL1P78423 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC14.79□□□□□ -0.04
CX3CL1P78423 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC14.79□□□□□ -0.04
CX3CL1P78423 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 CLN6-221ENST00000637494 765 ntTSL 5 BASIC14.79□□□□□ -0.04
CX3CL1P78423 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CX3CL1P78423 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CX3CL1P78423 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.79□□□□□ -0.04
CX3CL1P78423 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CX3CL1P78423 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CX3CL1P78423 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC14.78□□□□□ -0.04
CX3CL1P78423 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.78□□□□□ -0.04
CX3CL1P78423 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
CX3CL1P78423 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 AC036111.1-201ENST00000533973 1582 ntBASIC14.78□□□□□ -0.04
CX3CL1P78423 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
CX3CL1P78423 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
CX3CL1P78423 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CX3CL1P78423 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CX3CL1P78423 TMA16-209ENST00000513272 803 ntTSL 2 BASIC14.78□□□□□ -0.04
CX3CL1P78423 RPS20-210ENST00000523936 899 ntTSL 2 BASIC14.78□□□□□ -0.04
CX3CL1P78423 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC14.78□□□□□ -0.04
CX3CL1P78423 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
CX3CL1P78423 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 FAM87A-204ENST00000613235 858 ntBASIC14.78□□□□□ -0.04
CX3CL1P78423 MYC-208ENST00000641036 567 ntBASIC14.78□□□□□ -0.04
CX3CL1P78423 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CX3CL1P78423 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 EFTUD1P1-204ENST00000560401 1798 ntBASIC14.78□□□□□ -0.04
CX3CL1P78423 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.78□□□□□ -0.04
CX3CL1P78423 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CL1P78423 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CL1P78423 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
CX3CL1P78423 AC034236.2-201ENST00000606662 1610 ntBASIC14.77□□□□□ -0.04
CX3CL1P78423 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
CX3CL1P78423 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
CX3CL1P78423 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
CX3CL1P78423 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.77□□□□□ -0.04
CX3CL1P78423 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CL1P78423 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CL1P78423 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.77□□□□□ -0.04
CX3CL1P78423 AL499627.1-201ENST00000569373 2188 ntBASIC14.77□□□□□ -0.04
CX3CL1P78423 AC112777.1-201ENST00000540175 1423 ntBASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms