Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 REXO1L9P-201ENST00000604264 2108 ntBASIC14.01□□□□□ -0.17
HLA-DMBP28068 AC026471.5-201ENST00000615068 467 ntBASIC14.01□□□□□ -0.17
HLA-DMBP28068 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HLA-DMBP28068 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HLA-DMBP28068 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HLA-DMBP28068 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC14□□□□□ -0.17
HLA-DMBP28068 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14□□□□□ -0.17
HLA-DMBP28068 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC14□□□□□ -0.17
HLA-DMBP28068 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC14□□□□□ -0.17
HLA-DMBP28068 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
HLA-DMBP28068 FDX2-206ENST00000492239 773 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC14□□□□□ -0.17
HLA-DMBP28068 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC14□□□□□ -0.17
HLA-DMBP28068 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC14□□□□□ -0.17
HLA-DMBP28068 SLC25A1P4-201ENST00000567977 778 ntBASIC14□□□□□ -0.17
HLA-DMBP28068 AP000692.2-201ENST00000608391 879 ntBASIC14□□□□□ -0.17
HLA-DMBP28068 REXO1L12P-201ENST00000622156 912 ntBASIC14□□□□□ -0.17
HLA-DMBP28068 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
HLA-DMBP28068 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HLA-DMBP28068 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DMBP28068 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DMBP28068 FSCN1P1-201ENST00000568912 1481 ntBASIC13.99□□□□□ -0.17
HLA-DMBP28068 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 GPAT2P1-201ENST00000444924 1672 ntBASIC13.99□□□□□ -0.17
HLA-DMBP28068 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 BUB3-202ENST00000368859 667 ntTSL 3 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 AL023284.2-201ENST00000405850 579 ntBASIC13.99□□□□□ -0.17
HLA-DMBP28068 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 BX088651.1-201ENST00000540551 451 ntBASIC13.99□□□□□ -0.17
HLA-DMBP28068 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 DECR2-212ENST00000627716 352 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms