Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.42■□□□□ 0.38
UPK1AO00322 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
UPK1AO00322 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
UPK1AO00322 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.42■□□□□ 0.38
UPK1AO00322 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
UPK1AO00322 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
UPK1AO00322 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
UPK1AO00322 AC138028.4-201ENST00000564984 1845 ntBASIC17.42■□□□□ 0.38
UPK1AO00322 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
UPK1AO00322 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
UPK1AO00322 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
UPK1AO00322 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
UPK1AO00322 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
UPK1AO00322 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.41■□□□□ 0.38
UPK1AO00322 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.41■□□□□ 0.38
UPK1AO00322 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
UPK1AO00322 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.41■□□□□ 0.38
UPK1AO00322 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
UPK1AO00322 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.41■□□□□ 0.38
UPK1AO00322 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 AC112777.1-201ENST00000540175 1423 ntBASIC17.41■□□□□ 0.38
UPK1AO00322 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
UPK1AO00322 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.41■□□□□ 0.38
UPK1AO00322 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.41■□□□□ 0.38
UPK1AO00322 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 MYC-208ENST00000641036 567 ntBASIC17.41■□□□□ 0.38
UPK1AO00322 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 CYP2D8P-201ENST00000433633 1490 ntBASIC17.41■□□□□ 0.38
UPK1AO00322 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.41■□□□□ 0.38
UPK1AO00322 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.41■□□□□ 0.38
UPK1AO00322 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UPK1AO00322 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
UPK1AO00322 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1AO00322 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1AO00322 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.4■□□□□ 0.38
UPK1AO00322 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
UPK1AO00322 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.4■□□□□ 0.38
UPK1AO00322 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1AO00322 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1AO00322 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.4■□□□□ 0.38
UPK1AO00322 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1AO00322 MMP23A-201ENST00000234610 1017 ntBASIC17.4■□□□□ 0.38
UPK1AO00322 TSPY14P-201ENST00000303979 915 ntBASIC17.4■□□□□ 0.38
UPK1AO00322 AC007663.1-201ENST00000438948 1240 ntBASIC17.4■□□□□ 0.38
UPK1AO00322 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.4■□□□□ 0.38
UPK1AO00322 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.4■□□□□ 0.38
UPK1AO00322 MIR3180-5-201ENST00000583743 153 ntBASIC17.4■□□□□ 0.38
UPK1AO00322 AC116562.4-202ENST00000641738 218 ntBASIC17.4■□□□□ 0.38
UPK1AO00322 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
UPK1AO00322 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1AO00322 AL645608.8-201ENST00000606034 2086 ntBASIC17.4■□□□□ 0.38
UPK1AO00322 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.39■□□□□ 0.38
UPK1AO00322 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
UPK1AO00322 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1AO00322 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.39■□□□□ 0.37
UPK1AO00322 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1AO00322 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1AO00322 SIRPAP1-201ENST00000448467 1770 ntBASIC17.39■□□□□ 0.37
UPK1AO00322 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1AO00322 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1AO00322 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1AO00322 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.39■□□□□ 0.37
UPK1AO00322 KRT18P41-201ENST00000518924 1277 ntBASIC17.39■□□□□ 0.37
UPK1AO00322 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1AO00322 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.39■□□□□ 0.37
UPK1AO00322 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1AO00322 EGLN1P1-201ENST00000531623 762 ntBASIC17.39■□□□□ 0.37
UPK1AO00322 BX088651.1-201ENST00000540551 451 ntBASIC17.39■□□□□ 0.37
UPK1AO00322 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1AO00322 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
UPK1AO00322 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.39■□□□□ 0.37
UPK1AO00322 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
UPK1AO00322 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.39■□□□□ 0.37
UPK1AO00322 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.39■□□□□ 0.37
UPK1AO00322 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
UPK1AO00322 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
UPK1AO00322 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1AO00322 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.38■□□□□ 0.37
UPK1AO00322 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1AO00322 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1AO00322 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1AO00322 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1AO00322 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1AO00322 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1AO00322 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.38■□□□□ 0.37
UPK1AO00322 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1AO00322 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
UPK1AO00322 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.38■□□□□ 0.37
UPK1AO00322 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
UPK1AO00322 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms