Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.56■□□□□ 0.56
AP3B1O00203 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
AP3B1O00203 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
AP3B1O00203 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
AP3B1O00203 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
AP3B1O00203 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.56■□□□□ 0.56
AP3B1O00203 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
AP3B1O00203 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
AP3B1O00203 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.56■□□□□ 0.56
AP3B1O00203 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
AP3B1O00203 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
AP3B1O00203 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.56■□□□□ 0.56
AP3B1O00203 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP3B1O00203 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.55■□□□□ 0.56
AP3B1O00203 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
AP3B1O00203 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.55■□□□□ 0.56
AP3B1O00203 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
AP3B1O00203 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.55■□□□□ 0.56
AP3B1O00203 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.55■□□□□ 0.56
AP3B1O00203 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.55■□□□□ 0.56
AP3B1O00203 AL355075.4-201ENST00000554988 638 ntBASIC18.55■□□□□ 0.56
AP3B1O00203 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.55■□□□□ 0.56
AP3B1O00203 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
AP3B1O00203 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.55■□□□□ 0.56
AP3B1O00203 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.55■□□□□ 0.56
AP3B1O00203 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.55■□□□□ 0.56
AP3B1O00203 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP3B1O00203 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
AP3B1O00203 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.54■□□□□ 0.56
AP3B1O00203 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
AP3B1O00203 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.54■□□□□ 0.56
AP3B1O00203 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.54■□□□□ 0.56
AP3B1O00203 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
AP3B1O00203 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.54■□□□□ 0.56
AP3B1O00203 AL390955.1-201ENST00000428694 934 ntBASIC18.54■□□□□ 0.56
AP3B1O00203 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.54■□□□□ 0.56
AP3B1O00203 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.54■□□□□ 0.56
AP3B1O00203 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 AC008687.5-201ENST00000593746 558 ntBASIC18.54■□□□□ 0.56
AP3B1O00203 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.54■□□□□ 0.56
AP3B1O00203 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.54■□□□□ 0.56
AP3B1O00203 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.54■□□□□ 0.56
AP3B1O00203 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP3B1O00203 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
AP3B1O00203 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
AP3B1O00203 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
AP3B1O00203 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
AP3B1O00203 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms