Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC116Q8IYX3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 AL354751.1-201ENST00000412768 1863 ntBASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC116Q8IYX3 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 ESPNP-201ENST00000270691 2015 ntBASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC116Q8IYX3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 AC104390.1-201ENST00000555663 520 ntBASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 AC018470.1-201ENST00000624790 3129 ntBASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC116Q8IYX3 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 ABALON-201ENST00000629058 1903 ntBASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC116Q8IYX3 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms