Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A1P12109 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A1P12109 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A1P12109 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A1P12109 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.24■□□□□ 0.83
COL6A1P12109 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL6A1P12109 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A1P12109 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A1P12109 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.23■□□□□ 0.83
COL6A1P12109 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
COL6A1P12109 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.23■□□□□ 0.83
COL6A1P12109 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A1P12109 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
COL6A1P12109 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A1P12109 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.23■□□□□ 0.83
COL6A1P12109 AC105339.3-201ENST00000560043 636 ntBASIC20.23■□□□□ 0.83
COL6A1P12109 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A1P12109 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A1P12109 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A1P12109 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A1P12109 KRT18P28-201ENST00000453838 1332 ntBASIC20.23■□□□□ 0.83
COL6A1P12109 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A1P12109 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A1P12109 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
COL6A1P12109 AL163051.1-201ENST00000569214 1512 ntBASIC20.22■□□□□ 0.83
COL6A1P12109 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.22■□□□□ 0.83
COL6A1P12109 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A1P12109 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A1P12109 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL6A1P12109 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.22■□□□□ 0.83
COL6A1P12109 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.22■□□□□ 0.83
COL6A1P12109 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.22■□□□□ 0.83
COL6A1P12109 AC125634.1-201ENST00000438758 1403 ntBASIC20.22■□□□□ 0.83
COL6A1P12109 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A1P12109 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A1P12109 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A1P12109 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.22■□□□□ 0.83
COL6A1P12109 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.22■□□□□ 0.83
COL6A1P12109 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.22■□□□□ 0.83
COL6A1P12109 MTDHP5-201ENST00000598980 586 ntBASIC20.22■□□□□ 0.83
COL6A1P12109 AL139288.1-201ENST00000623748 933 ntBASIC20.22■□□□□ 0.83
COL6A1P12109 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A1P12109 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.22■□□□□ 0.83
COL6A1P12109 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A1P12109 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL6A1P12109 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL6A1P12109 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A1P12109 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL6A1P12109 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
COL6A1P12109 IRX1P1-201ENST00000438849 1838 ntBASIC20.21■□□□□ 0.83
COL6A1P12109 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.21■□□□□ 0.83
COL6A1P12109 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.21■□□□□ 0.83
COL6A1P12109 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.21■□□□□ 0.83
COL6A1P12109 AC007967.2-201ENST00000432613 625 ntBASIC20.21■□□□□ 0.83
COL6A1P12109 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.21■□□□□ 0.83
COL6A1P12109 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
COL6A1P12109 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.21■□□□□ 0.83
COL6A1P12109 KRT18P41-201ENST00000518924 1277 ntBASIC20.21■□□□□ 0.83
COL6A1P12109 AC107918.4-202ENST00000641623 219 ntBASIC20.21■□□□□ 0.83
COL6A1P12109 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.21■□□□□ 0.83
COL6A1P12109 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.21■□□□□ 0.83
COL6A1P12109 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A1P12109 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A1P12109 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A1P12109 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.2■□□□□ 0.82
COL6A1P12109 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.2■□□□□ 0.82
COL6A1P12109 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A1P12109 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A1P12109 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A1P12109 AP002414.3-201ENST00000589352 1468 ntBASIC20.2■□□□□ 0.82
COL6A1P12109 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A1P12109 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A1P12109 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A1P12109 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A1P12109 AC211486.1-202ENST00000416371 468 ntBASIC20.2■□□□□ 0.82
COL6A1P12109 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A1P12109 CYMP-203ENST00000474680 1263 ntBASIC20.2■□□□□ 0.82
COL6A1P12109 AC211476.1-201ENST00000503899 468 ntBASIC20.2■□□□□ 0.82
COL6A1P12109 RFPL4AP1-201ENST00000530883 850 ntBASIC20.2■□□□□ 0.82
COL6A1P12109 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.2■□□□□ 0.82
COL6A1P12109 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.2■□□□□ 0.82
COL6A1P12109 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.2■□□□□ 0.82
COL6A1P12109 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
COL6A1P12109 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A1P12109 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A1P12109 AC125437.2-201ENST00000625180 2167 ntBASIC20.19■□□□□ 0.82
COL6A1P12109 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A1P12109 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.19■□□□□ 0.82
COL6A1P12109 FP475955.4-201ENST00000623131 1990 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms