Protein–RNA interactions for Protein: P01033

TIMP1, Metalloproteinase inhibitor 1, humanhuman

Predictions only

Length 207 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1P01033 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TIMP1P01033 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TIMP1P01033 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.82■□□□□ 0.76
TIMP1P01033 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.82■□□□□ 0.76
TIMP1P01033 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.82■□□□□ 0.76
TIMP1P01033 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.81■□□□□ 0.76
TIMP1P01033 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TIMP1P01033 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TIMP1P01033 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.81■□□□□ 0.76
TIMP1P01033 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TIMP1P01033 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TIMP1P01033 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
TIMP1P01033 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
TIMP1P01033 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.81■□□□□ 0.76
TIMP1P01033 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TIMP1P01033 AC009947.1-201ENST00000444350 727 ntBASIC19.81■□□□□ 0.76
TIMP1P01033 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.81■□□□□ 0.76
TIMP1P01033 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.81■□□□□ 0.76
TIMP1P01033 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.81■□□□□ 0.76
TIMP1P01033 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.81■□□□□ 0.76
TIMP1P01033 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.81■□□□□ 0.76
TIMP1P01033 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.81■□□□□ 0.76
TIMP1P01033 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.81■□□□□ 0.76
TIMP1P01033 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.81■□□□□ 0.76
TIMP1P01033 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.81■□□□□ 0.76
TIMP1P01033 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TIMP1P01033 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TIMP1P01033 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
TIMP1P01033 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.8■□□□□ 0.76
TIMP1P01033 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.8■□□□□ 0.76
TIMP1P01033 KRT18P28-201ENST00000453838 1332 ntBASIC19.8■□□□□ 0.76
TIMP1P01033 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.8■□□□□ 0.76
TIMP1P01033 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.8■□□□□ 0.76
TIMP1P01033 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TIMP1P01033 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TIMP1P01033 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TIMP1P01033 AP006288.1-201ENST00000446065 395 ntBASIC19.8■□□□□ 0.76
TIMP1P01033 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.8■□□□□ 0.76
TIMP1P01033 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.8■□□□□ 0.76
TIMP1P01033 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.8■□□□□ 0.76
TIMP1P01033 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TIMP1P01033 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TIMP1P01033 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.8■□□□□ 0.76
TIMP1P01033 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.8■□□□□ 0.76
TIMP1P01033 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TIMP1P01033 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TIMP1P01033 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.8■□□□□ 0.76
TIMP1P01033 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
TIMP1P01033 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TIMP1P01033 AL024508.2-201ENST00000607749 1894 ntBASIC19.79■□□□□ 0.76
TIMP1P01033 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.79■□□□□ 0.76
TIMP1P01033 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TIMP1P01033 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TIMP1P01033 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.79■□□□□ 0.76
TIMP1P01033 LAGE3P1-201ENST00000425356 484 ntBASIC19.79■□□□□ 0.76
TIMP1P01033 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.79■□□□□ 0.76
TIMP1P01033 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.79■□□□□ 0.76
TIMP1P01033 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.79■□□□□ 0.76
TIMP1P01033 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TIMP1P01033 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.79■□□□□ 0.76
TIMP1P01033 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TIMP1P01033 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TIMP1P01033 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TIMP1P01033 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.79■□□□□ 0.76
TIMP1P01033 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.79■□□□□ 0.76
TIMP1P01033 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TIMP1P01033 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TIMP1P01033 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.78■□□□□ 0.76
TIMP1P01033 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.78■□□□□ 0.76
TIMP1P01033 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.78■□□□□ 0.76
TIMP1P01033 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.78■□□□□ 0.76
TIMP1P01033 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.78■□□□□ 0.76
TIMP1P01033 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.78■□□□□ 0.76
TIMP1P01033 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.78■□□□□ 0.76
TIMP1P01033 MIR3197-201ENST00000582241 73 ntBASIC19.78■□□□□ 0.76
TIMP1P01033 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.78■□□□□ 0.76
TIMP1P01033 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP1P01033 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.78■□□□□ 0.76
TIMP1P01033 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms