Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGN4O00479 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGN4O00479 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
HMGN4O00479 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGN4O00479 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HMGN4O00479 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HMGN4O00479 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGN4O00479 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HMGN4O00479 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HMGN4O00479 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.11■□□□□ 0.33
HMGN4O00479 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.11■□□□□ 0.33
HMGN4O00479 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGN4O00479 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.11■□□□□ 0.33
HMGN4O00479 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGN4O00479 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGN4O00479 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HMGN4O00479 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 KRT17P2-201ENST00000300992 1314 ntBASIC17.11■□□□□ 0.33
HMGN4O00479 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HMGN4O00479 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HMGN4O00479 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 FLJ13224-201ENST00000313737 1514 ntBASIC17.11■□□□□ 0.33
HMGN4O00479 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGN4O00479 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGN4O00479 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGN4O00479 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGN4O00479 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGN4O00479 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGN4O00479 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 TSPY14P-201ENST00000303979 915 ntBASIC17.1■□□□□ 0.33
HMGN4O00479 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 SLC25A6P5-201ENST00000435663 894 ntBASIC17.1■□□□□ 0.33
HMGN4O00479 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGN4O00479 C2orf69P3-201ENST00000565542 1120 ntBASIC17.1■□□□□ 0.33
HMGN4O00479 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGN4O00479 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGN4O00479 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGN4O00479 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
HMGN4O00479 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HMGN4O00479 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGN4O00479 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGN4O00479 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGN4O00479 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGN4O00479 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HMGN4O00479 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
HMGN4O00479 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGN4O00479 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGN4O00479 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.09■□□□□ 0.33
HMGN4O00479 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
HMGN4O00479 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 AC010653.2-201ENST00000623505 997 ntBASIC17.09■□□□□ 0.33
HMGN4O00479 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms