Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 AC104390.1-201ENST00000555663 520 ntBASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 CYP2D8P-201ENST00000433633 1490 ntBASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 AP000523.1-201ENST00000398242 1049 ntBASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS9D1Q9Y2B5 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 AL596275.1-201ENST00000423464 877 ntBASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 TSPY15P-201ENST00000457163 923 ntBASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 NEK4P2-201ENST00000580004 1012 ntBASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS9D1Q9Y2B5 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 KRT18P22-201ENST00000402024 1347 ntBASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms