Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 CROCCP3-202ENST00000420820 1947 ntBASIC21.15■□□□□ 0.98
DDX41Q9UJV9 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX41Q9UJV9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
DDX41Q9UJV9 RCC2P3-201ENST00000418112 1537 ntBASIC21.14■□□□□ 0.98
DDX41Q9UJV9 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
DDX41Q9UJV9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
DDX41Q9UJV9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 TOLLIP-AS1-201ENST00000530897 939 ntBASIC21.14■□□□□ 0.97
DDX41Q9UJV9 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.14■□□□□ 0.97
DDX41Q9UJV9 AC112497.1-201ENST00000624824 639 ntBASIC21.14■□□□□ 0.97
DDX41Q9UJV9 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 AC008556.1-201ENST00000610908 2040 ntBASIC21.14■□□□□ 0.97
DDX41Q9UJV9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
DDX41Q9UJV9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.13■□□□□ 0.97
DDX41Q9UJV9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 IRX1P1-201ENST00000438849 1838 ntBASIC21.13■□□□□ 0.97
DDX41Q9UJV9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 NOC2LP2-201ENST00000407594 1944 ntBASIC21.13■□□□□ 0.97
DDX41Q9UJV9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.13■□□□□ 0.97
DDX41Q9UJV9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
DDX41Q9UJV9 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms