Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 AL356309.3-201ENST00000624132 1934 ntBASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CHMP1AQ9HD42 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 RNA5SP413-201ENST00000516373 109 ntBASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 AC142086.2-201ENST00000569753 217 ntBASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CHMP1AQ9HD42 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms