Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 ESPNP-201ENST00000270691 2015 ntBASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 AC113410.3-201ENST00000623366 203 ntBASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 NOC2LP2-201ENST00000407594 1944 ntBASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 FSCN1P1-201ENST00000568912 1481 ntBASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 AL596275.1-201ENST00000423464 877 ntBASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 UBE2SP1-201ENST00000450587 669 ntBASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 GPAT2P1-201ENST00000444924 1672 ntBASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM56Q9BRZ2 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 KRT8P45-201ENST00000414328 1447 ntBASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 RPS2P55-201ENST00000397318 883 ntBASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 AC107956.1-201ENST00000494359 873 ntBASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM56Q9BRZ2 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms