Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS50Q96JG6 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS50Q96JG6 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS50Q96JG6 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.03■□□□□ 0.48
VPS50Q96JG6 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS50Q96JG6 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS50Q96JG6 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS50Q96JG6 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS50Q96JG6 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS50Q96JG6 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS50Q96JG6 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS50Q96JG6 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS50Q96JG6 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
VPS50Q96JG6 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
VPS50Q96JG6 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS50Q96JG6 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 AC068880.1-201ENST00000507289 2297 ntBASIC18.02■□□□□ 0.48
VPS50Q96JG6 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 HMGA1P5-201ENST00000412453 271 ntBASIC18.02■□□□□ 0.48
VPS50Q96JG6 AC091390.4-202ENST00000476426 537 ntBASIC18.02■□□□□ 0.48
VPS50Q96JG6 CA15P1-201ENST00000481698 905 ntBASIC18.02■□□□□ 0.48
VPS50Q96JG6 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VPS50Q96JG6 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS50Q96JG6 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VPS50Q96JG6 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.02■□□□□ 0.47
VPS50Q96JG6 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
VPS50Q96JG6 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
VPS50Q96JG6 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS50Q96JG6 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.02■□□□□ 0.47
VPS50Q96JG6 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
VPS50Q96JG6 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
VPS50Q96JG6 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS50Q96JG6 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS50Q96JG6 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS50Q96JG6 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS50Q96JG6 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS50Q96JG6 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS50Q96JG6 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS50Q96JG6 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS50Q96JG6 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.01■□□□□ 0.47
VPS50Q96JG6 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS50Q96JG6 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 TSPY17P-201ENST00000450329 467 ntBASIC18.01■□□□□ 0.47
VPS50Q96JG6 Z85996.1-201ENST00000494644 937 ntBASIC18.01■□□□□ 0.47
VPS50Q96JG6 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 AC010653.2-201ENST00000623505 997 ntBASIC18.01■□□□□ 0.47
VPS50Q96JG6 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS50Q96JG6 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS50Q96JG6 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
VPS50Q96JG6 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS50Q96JG6 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18■□□□□ 0.47
VPS50Q96JG6 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18■□□□□ 0.47
VPS50Q96JG6 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18■□□□□ 0.47
VPS50Q96JG6 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VPS50Q96JG6 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18■□□□□ 0.47
VPS50Q96JG6 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS50Q96JG6 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18■□□□□ 0.47
VPS50Q96JG6 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS50Q96JG6 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS50Q96JG6 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS50Q96JG6 TERF1P1-201ENST00000311003 1181 ntBASIC18■□□□□ 0.47
VPS50Q96JG6 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
VPS50Q96JG6 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS50Q96JG6 LINC01238-205ENST00000567549 1107 ntBASIC18■□□□□ 0.47
VPS50Q96JG6 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
VPS50Q96JG6 HR-201ENST00000312841 5351 ntTSL 5 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms