Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 AC024909.3-201ENST00000611513 2257 ntBASIC11.51□□□□□ -0.57
LINC00643Q86TS7 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 AC132872.4-202ENST00000622924 2756 ntBASIC11.5□□□□□ -0.57
LINC00643Q86TS7 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 AC104640.1-201ENST00000562617 2109 ntBASIC11.5□□□□□ -0.57
LINC00643Q86TS7 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 AC133637.1-201ENST00000624115 1537 ntBASIC11.5□□□□□ -0.57
LINC00643Q86TS7 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 AC009831.1-201ENST00000580420 1582 ntBASIC11.5□□□□□ -0.57
LINC00643Q86TS7 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00643Q86TS7 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 MLEC-202ENST00000412616 841 ntTSL 3 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 AL451085.2-201ENST00000605085 799 ntBASIC11.49□□□□□ -0.57
LINC00643Q86TS7 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00643Q86TS7 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms