Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 MIR149-201ENST00000384879 89 ntBASIC19.55■□□□□ 0.72
USP41Q3LFD5 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP41Q3LFD5 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.55■□□□□ 0.72
USP41Q3LFD5 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
USP41Q3LFD5 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.54■□□□□ 0.72
USP41Q3LFD5 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
USP41Q3LFD5 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
USP41Q3LFD5 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.54■□□□□ 0.72
USP41Q3LFD5 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.54■□□□□ 0.72
USP41Q3LFD5 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.54■□□□□ 0.72
USP41Q3LFD5 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.54■□□□□ 0.72
USP41Q3LFD5 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP41Q3LFD5 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.53■□□□□ 0.72
USP41Q3LFD5 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.53■□□□□ 0.72
USP41Q3LFD5 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USP41Q3LFD5 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.53■□□□□ 0.72
USP41Q3LFD5 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.53■□□□□ 0.72
USP41Q3LFD5 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.53■□□□□ 0.72
USP41Q3LFD5 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.53■□□□□ 0.72
USP41Q3LFD5 AC011840.4-201ENST00000578471 627 ntBASIC19.53■□□□□ 0.72
USP41Q3LFD5 AC008687.5-201ENST00000593746 558 ntBASIC19.53■□□□□ 0.72
USP41Q3LFD5 AC004263.2-201ENST00000617183 678 ntBASIC19.53■□□□□ 0.72
USP41Q3LFD5 AL031008.1-201ENST00000619963 541 ntBASIC19.53■□□□□ 0.72
USP41Q3LFD5 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
USP41Q3LFD5 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP41Q3LFD5 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP41Q3LFD5 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP41Q3LFD5 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP41Q3LFD5 NSUN5P1-202ENST00000421140 1535 ntBASIC19.52■□□□□ 0.72
USP41Q3LFD5 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 NSUN5P2-203ENST00000457352 1529 ntBASIC19.52■□□□□ 0.72
USP41Q3LFD5 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP41Q3LFD5 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP41Q3LFD5 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP41Q3LFD5 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP41Q3LFD5 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms