Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
RPL39P62891 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RPL39P62891 KRT8P45-201ENST00000414328 1447 ntBASIC13.04□□□□□ -0.32
RPL39P62891 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
RPL39P62891 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
RPL39P62891 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
RPL39P62891 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RPL39P62891 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RPL39P62891 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
RPL39P62891 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
RPL39P62891 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
RPL39P62891 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
RPL39P62891 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC13.03□□□□□ -0.32
RPL39P62891 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
RPL39P62891 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC13.03□□□□□ -0.32
RPL39P62891 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
RPL39P62891 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
RPL39P62891 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC13.03□□□□□ -0.32
RPL39P62891 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
RPL39P62891 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC13.03□□□□□ -0.32
RPL39P62891 MIPEPP3-201ENST00000412105 444 ntBASIC13.03□□□□□ -0.32
RPL39P62891 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC13.03□□□□□ -0.32
RPL39P62891 AC091874.3-201ENST00000512672 1195 ntBASIC13.03□□□□□ -0.32
RPL39P62891 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC13.03□□□□□ -0.32
RPL39P62891 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC13.03□□□□□ -0.32
RPL39P62891 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RPL39P62891 KRT8P32-201ENST00000512863 1461 ntBASIC13.03□□□□□ -0.32
RPL39P62891 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.32
RPL39P62891 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 KRT8P41-201ENST00000533985 1514 ntBASIC13.03□□□□□ -0.32
RPL39P62891 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
RPL39P62891 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RPL39P62891 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
RPL39P62891 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RPL39P62891 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
RPL39P62891 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
RPL39P62891 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.32
RPL39P62891 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RPL39P62891 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.02□□□□□ -0.32
RPL39P62891 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC13.02□□□□□ -0.32
RPL39P62891 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.32
RPL39P62891 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.02□□□□□ -0.33
RPL39P62891 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
RPL39P62891 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC13.02□□□□□ -0.33
RPL39P62891 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC13.02□□□□□ -0.33
RPL39P62891 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC13.02□□□□□ -0.33
RPL39P62891 GATS-209ENST00000454084 1030 ntTSL 3 BASIC13.02□□□□□ -0.33
RPL39P62891 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 SLC29A4P2-201ENST00000504749 1089 ntBASIC13.02□□□□□ -0.33
RPL39P62891 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC13.02□□□□□ -0.33
RPL39P62891 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC13.02□□□□□ -0.33
RPL39P62891 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
RPL39P62891 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC13.02□□□□□ -0.33
RPL39P62891 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
RPL39P62891 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.33
RPL39P62891 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RPL39P62891 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RPL39P62891 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RPL39P62891 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RPL39P62891 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
RPL39P62891 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms