Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CDH13P55290 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH13P55290 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CDH13P55290 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH13P55290 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CDH13P55290 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CDH13P55290 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CDH13P55290 RPS2P55-201ENST00000397318 883 ntBASIC18.03■□□□□ 0.48
CDH13P55290 AC107956.1-201ENST00000494359 873 ntBASIC18.03■□□□□ 0.48
CDH13P55290 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.03■□□□□ 0.48
CDH13P55290 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.03■□□□□ 0.48
CDH13P55290 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CDH13P55290 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.03■□□□□ 0.48
CDH13P55290 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.03■□□□□ 0.48
CDH13P55290 AC113410.3-201ENST00000623366 203 ntBASIC18.03■□□□□ 0.48
CDH13P55290 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.03■□□□□ 0.48
CDH13P55290 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CDH13P55290 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH13P55290 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH13P55290 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH13P55290 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 LTB4R2-202ENST00000528054 3092 ntBASIC18.02■□□□□ 0.48
CDH13P55290 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH13P55290 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH13P55290 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CDH13P55290 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CDH13P55290 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CDH13P55290 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CDH13P55290 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH13P55290 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH13P55290 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.02■□□□□ 0.48
CDH13P55290 DGCR10-201ENST00000609839 495 ntBASIC18.02■□□□□ 0.48
CDH13P55290 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CDH13P55290 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH13P55290 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH13P55290 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.02■□□□□ 0.47
CDH13P55290 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH13P55290 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.01■□□□□ 0.47
CDH13P55290 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.01■□□□□ 0.47
CDH13P55290 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH13P55290 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CDH13P55290 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 ABHD17AP1-201ENST00000358206 933 ntBASIC18.01■□□□□ 0.47
CDH13P55290 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH13P55290 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH13P55290 GCSHP5-201ENST00000443090 522 ntBASIC18.01■□□□□ 0.47
CDH13P55290 UBE2SP1-201ENST00000450587 669 ntBASIC18.01■□□□□ 0.47
CDH13P55290 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH13P55290 REXO1L10P-201ENST00000615707 1290 ntBASIC18.01■□□□□ 0.47
CDH13P55290 REXO1L12P-201ENST00000622156 912 ntBASIC18.01■□□□□ 0.47
CDH13P55290 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH13P55290 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CDH13P55290 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.01■□□□□ 0.47
CDH13P55290 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH13P55290 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.01■□□□□ 0.47
CDH13P55290 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CDH13P55290 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH13P55290 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CDH13P55290 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH13P55290 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH13P55290 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH13P55290 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH13P55290 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18■□□□□ 0.47
CDH13P55290 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CDH13P55290 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms