Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CDH6P55285 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.16■□□□□ 0.66
CDH6P55285 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CDH6P55285 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CDH6P55285 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CDH6P55285 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CDH6P55285 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CDH6P55285 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.16■□□□□ 0.66
CDH6P55285 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.16■□□□□ 0.66
CDH6P55285 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CDH6P55285 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 KRT8P7-201ENST00000533003 1432 ntBASIC19.16■□□□□ 0.66
CDH6P55285 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.16■□□□□ 0.66
CDH6P55285 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CDH6P55285 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CDH6P55285 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CDH6P55285 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH6P55285 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.15■□□□□ 0.66
CDH6P55285 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CDH6P55285 AL163051.1-201ENST00000569214 1512 ntBASIC19.15■□□□□ 0.66
CDH6P55285 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.15■□□□□ 0.66
CDH6P55285 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CDH6P55285 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.15■□□□□ 0.66
CDH6P55285 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.15■□□□□ 0.66
CDH6P55285 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
CDH6P55285 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CDH6P55285 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.15■□□□□ 0.66
CDH6P55285 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.15■□□□□ 0.66
CDH6P55285 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.15■□□□□ 0.66
CDH6P55285 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.15■□□□□ 0.66
CDH6P55285 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.15■□□□□ 0.66
CDH6P55285 ECEL1P2-202ENST00000465689 757 ntBASIC19.15■□□□□ 0.66
CDH6P55285 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.15■□□□□ 0.66
CDH6P55285 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.15■□□□□ 0.66
CDH6P55285 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CDH6P55285 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH6P55285 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
CDH6P55285 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CDH6P55285 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CDH6P55285 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.14■□□□□ 0.66
CDH6P55285 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CDH6P55285 AC093677.2-201ENST00000600169 1863 ntBASIC19.14■□□□□ 0.65
CDH6P55285 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDH6P55285 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.14■□□□□ 0.65
CDH6P55285 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.14■□□□□ 0.65
CDH6P55285 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDH6P55285 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.14■□□□□ 0.65
CDH6P55285 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
CDH6P55285 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CDH6P55285 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CDH6P55285 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDH6P55285 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.14■□□□□ 0.65
CDH6P55285 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.14■□□□□ 0.65
CDH6P55285 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.14■□□□□ 0.65
CDH6P55285 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
CDH6P55285 FAM87A-204ENST00000613235 858 ntBASIC19.14■□□□□ 0.65
CDH6P55285 AC073912.3-201ENST00000624414 853 ntBASIC19.14■□□□□ 0.65
CDH6P55285 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CDH6P55285 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDH6P55285 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.14■□□□□ 0.65
CDH6P55285 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CDH6P55285 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDH6P55285 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms