Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
COPAP53621 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
COPAP53621 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COPAP53621 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COPAP53621 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.99■□□□□ 0.63
COPAP53621 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
COPAP53621 HBZP1-201ENST00000354915 429 ntBASIC18.99■□□□□ 0.63
COPAP53621 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COPAP53621 MCCD1P1-208ENST00000445732 328 ntBASIC18.99■□□□□ 0.63
COPAP53621 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.99■□□□□ 0.63
COPAP53621 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.99■□□□□ 0.63
COPAP53621 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.99■□□□□ 0.63
COPAP53621 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.99■□□□□ 0.63
COPAP53621 MIR3180-5-201ENST00000583743 153 ntBASIC18.99■□□□□ 0.63
COPAP53621 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COPAP53621 AC069148.1-201ENST00000608741 768 ntBASIC18.99■□□□□ 0.63
COPAP53621 AC024243.1-201ENST00000609234 778 ntBASIC18.99■□□□□ 0.63
COPAP53621 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.99■□□□□ 0.63
COPAP53621 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COPAP53621 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COPAP53621 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COPAP53621 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.99■□□□□ 0.63
COPAP53621 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COPAP53621 AC090340.1-201ENST00000620778 4980 ntBASIC18.99■□□□□ 0.63
COPAP53621 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COPAP53621 HCG11-201ENST00000411553 5696 ntBASIC18.99■□□□□ 0.63
COPAP53621 AL390961.4-201ENST00000623958 2535 ntBASIC18.99■□□□□ 0.63
COPAP53621 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COPAP53621 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 TEX21P-204ENST00000641479 1693 ntBASIC18.98■□□□□ 0.63
COPAP53621 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.98■□□□□ 0.63
COPAP53621 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.98■□□□□ 0.63
COPAP53621 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.98■□□□□ 0.63
COPAP53621 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.98■□□□□ 0.63
COPAP53621 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
COPAP53621 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.98■□□□□ 0.63
COPAP53621 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.98■□□□□ 0.63
COPAP53621 AC092597.1-201ENST00000487352 616 ntBASIC18.98■□□□□ 0.63
COPAP53621 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.98■□□□□ 0.63
COPAP53621 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.98■□□□□ 0.63
COPAP53621 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COPAP53621 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COPAP53621 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
COPAP53621 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.97■□□□□ 0.63
COPAP53621 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COPAP53621 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.97■□□□□ 0.63
COPAP53621 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.97■□□□□ 0.63
COPAP53621 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.97■□□□□ 0.63
COPAP53621 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.97■□□□□ 0.63
COPAP53621 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 AL161938.1-201ENST00000569833 2180 ntBASIC18.97■□□□□ 0.63
COPAP53621 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COPAP53621 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COPAP53621 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.97■□□□□ 0.63
COPAP53621 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
COPAP53621 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.96■□□□□ 0.63
COPAP53621 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COPAP53621 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.96■□□□□ 0.63
COPAP53621 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.96■□□□□ 0.63
COPAP53621 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
COPAP53621 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.96■□□□□ 0.63
COPAP53621 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.96■□□□□ 0.63
COPAP53621 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COPAP53621 AC135050.7-201ENST00000624508 2218 ntBASIC18.96■□□□□ 0.63
COPAP53621 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
COPAP53621 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COPAP53621 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COPAP53621 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COPAP53621 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COPAP53621 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.96■□□□□ 0.63
COPAP53621 AC034232.1-201ENST00000506026 1064 ntBASIC18.96■□□□□ 0.63
COPAP53621 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.96■□□□□ 0.63
COPAP53621 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COPAP53621 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.96■□□□□ 0.63
COPAP53621 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.96■□□□□ 0.63
COPAP53621 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms