Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CR1P49238 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CR1P49238 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CX3CR1P49238 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CR1P49238 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CR1P49238 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.21■□□□□ 0.19
CX3CR1P49238 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.21■□□□□ 0.19
CX3CR1P49238 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CR1P49238 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.21■□□□□ 0.19
CX3CR1P49238 CA15P1-201ENST00000481698 905 ntBASIC16.21■□□□□ 0.19
CX3CR1P49238 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
CX3CR1P49238 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.21■□□□□ 0.19
CX3CR1P49238 Z99916.2-201ENST00000604037 246 ntBASIC16.21■□□□□ 0.19
CX3CR1P49238 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CR1P49238 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CX3CR1P49238 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CR1P49238 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.21■□□□□ 0.19
CX3CR1P49238 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CR1P49238 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CR1P49238 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.21■□□□□ 0.19
CX3CR1P49238 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CX3CR1P49238 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CR1P49238 AP000997.3-201ENST00000623333 2250 ntBASIC16.21■□□□□ 0.19
CX3CR1P49238 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.21■□□□□ 0.18
CX3CR1P49238 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CX3CR1P49238 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CX3CR1P49238 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 AL133373.2-201ENST00000623187 2828 ntBASIC16.2■□□□□ 0.18
CX3CR1P49238 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CX3CR1P49238 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
CX3CR1P49238 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.2■□□□□ 0.18
CX3CR1P49238 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.2■□□□□ 0.18
CX3CR1P49238 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CX3CR1P49238 MIR564-202ENST00000385049 94 ntBASIC16.2■□□□□ 0.18
CX3CR1P49238 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.2■□□□□ 0.18
CX3CR1P49238 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.2■□□□□ 0.18
CX3CR1P49238 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.2■□□□□ 0.18
CX3CR1P49238 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.2■□□□□ 0.18
CX3CR1P49238 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.2■□□□□ 0.18
CX3CR1P49238 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.2■□□□□ 0.18
CX3CR1P49238 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.2■□□□□ 0.18
CX3CR1P49238 NOC2LP1-202ENST00000452600 2235 ntBASIC16.2■□□□□ 0.18
CX3CR1P49238 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.2■□□□□ 0.18
CX3CR1P49238 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CX3CR1P49238 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CR1P49238 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.19■□□□□ 0.18
CX3CR1P49238 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CX3CR1P49238 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.19■□□□□ 0.18
CX3CR1P49238 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.19■□□□□ 0.18
CX3CR1P49238 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.19■□□□□ 0.18
CX3CR1P49238 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 MIR718-201ENST00000390190 70 ntBASIC16.19■□□□□ 0.18
CX3CR1P49238 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.19■□□□□ 0.18
CX3CR1P49238 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.19■□□□□ 0.18
CX3CR1P49238 KRT18P41-201ENST00000518924 1277 ntBASIC16.19■□□□□ 0.18
CX3CR1P49238 AP003071.4-201ENST00000562276 1284 ntBASIC16.19■□□□□ 0.18
CX3CR1P49238 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CX3CR1P49238 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CX3CR1P49238 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CX3CR1P49238 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.19■□□□□ 0.18
CX3CR1P49238 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
CX3CR1P49238 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CR1P49238 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.19■□□□□ 0.18
CX3CR1P49238 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CR1P49238 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CR1P49238 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CR1P49238 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CR1P49238 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CR1P49238 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.18■□□□□ 0.18
CX3CR1P49238 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CR1P49238 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CX3CR1P49238 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.18■□□□□ 0.18
CX3CR1P49238 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CR1P49238 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
CX3CR1P49238 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms