Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCNAP12004 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.96■□□□□ 0.47
PCNAP12004 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.96■□□□□ 0.47
PCNAP12004 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCNAP12004 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCNAP12004 CA15P1-201ENST00000481698 905 ntBASIC17.96■□□□□ 0.47
PCNAP12004 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.96■□□□□ 0.47
PCNAP12004 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.96■□□□□ 0.47
PCNAP12004 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
PCNAP12004 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCNAP12004 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCNAP12004 NOC2LP1-202ENST00000452600 2235 ntBASIC17.96■□□□□ 0.47
PCNAP12004 OR6D1P-202ENST00000641007 5290 ntBASIC17.96■□□□□ 0.47
PCNAP12004 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCNAP12004 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.96■□□□□ 0.47
PCNAP12004 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.96■□□□□ 0.47
PCNAP12004 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
PCNAP12004 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PCNAP12004 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.95■□□□□ 0.46
PCNAP12004 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
PCNAP12004 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
PCNAP12004 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PCNAP12004 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.95■□□□□ 0.46
PCNAP12004 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.95■□□□□ 0.46
PCNAP12004 AC093827.2-201ENST00000512654 315 ntBASIC17.95■□□□□ 0.46
PCNAP12004 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.95■□□□□ 0.46
PCNAP12004 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.95■□□□□ 0.46
PCNAP12004 AL109659.2-201ENST00000606809 1674 ntBASIC17.95■□□□□ 0.46
PCNAP12004 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.95■□□□□ 0.46
PCNAP12004 AC068880.1-201ENST00000507289 2297 ntBASIC17.95■□□□□ 0.46
PCNAP12004 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCNAP12004 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PCNAP12004 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
PCNAP12004 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.94■□□□□ 0.46
PCNAP12004 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.94■□□□□ 0.46
PCNAP12004 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.94■□□□□ 0.46
PCNAP12004 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.94■□□□□ 0.46
PCNAP12004 FITM1-202ENST00000559294 800 ntBASIC17.94■□□□□ 0.46
PCNAP12004 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.94■□□□□ 0.46
PCNAP12004 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
PCNAP12004 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
PCNAP12004 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PCNAP12004 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.94■□□□□ 0.46
PCNAP12004 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PCNAP12004 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCNAP12004 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PCNAP12004 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PCNAP12004 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.93■□□□□ 0.46
PCNAP12004 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
PCNAP12004 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.93■□□□□ 0.46
PCNAP12004 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.93■□□□□ 0.46
PCNAP12004 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PCNAP12004 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.93■□□□□ 0.46
PCNAP12004 MYC-208ENST00000641036 567 ntBASIC17.93■□□□□ 0.46
PCNAP12004 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.93■□□□□ 0.46
PCNAP12004 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms