Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 AL845331.1-201ENST00000424978 1190 ntBASIC21.68■■□□□ 1.06
HLA-DOAP06340 KRT17P6-201ENST00000453795 1220 ntBASIC21.68■■□□□ 1.06
HLA-DOAP06340 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.68■■□□□ 1.06
HLA-DOAP06340 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.68■■□□□ 1.06
HLA-DOAP06340 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.68■■□□□ 1.06
HLA-DOAP06340 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HLA-DOAP06340 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
HLA-DOAP06340 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
HLA-DOAP06340 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.67■■□□□ 1.06
HLA-DOAP06340 FAAHP1-202ENST00000446499 1238 ntBASIC21.67■■□□□ 1.06
HLA-DOAP06340 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.67■■□□□ 1.06
HLA-DOAP06340 AC113404.2-201ENST00000507884 177 ntBASIC21.67■■□□□ 1.06
HLA-DOAP06340 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC21.67■■□□□ 1.06
HLA-DOAP06340 AC099336.1-202ENST00000602961 463 ntBASIC21.67■■□□□ 1.06
HLA-DOAP06340 AC138894.3-201ENST00000603787 634 ntBASIC21.67■■□□□ 1.06
HLA-DOAP06340 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.67■■□□□ 1.06
HLA-DOAP06340 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.67■■□□□ 1.06
HLA-DOAP06340 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HLA-DOAP06340 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
HLA-DOAP06340 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 AC246785.2-201ENST00000432512 513 ntBASIC21.66■■□□□ 1.06
HLA-DOAP06340 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 KRT18P31-201ENST00000506277 1292 ntBASIC21.66■■□□□ 1.06
HLA-DOAP06340 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 AC011840.4-201ENST00000578471 627 ntBASIC21.66■■□□□ 1.06
HLA-DOAP06340 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.66■■□□□ 1.06
HLA-DOAP06340 SDHAP2-201ENST00000455183 2001 ntBASIC21.66■■□□□ 1.06
HLA-DOAP06340 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DOAP06340 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
HLA-DOAP06340 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DOAP06340 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DOAP06340 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DOAP06340 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DOAP06340 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DOAP06340 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DOAP06340 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DOAP06340 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
HLA-DOAP06340 AC099343.3-201ENST00000605834 2503 ntBASIC21.65■■□□□ 1.06
HLA-DOAP06340 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DOAP06340 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HLA-DOAP06340 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HLA-DOAP06340 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HLA-DOAP06340 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.64■■□□□ 1.06
HLA-DOAP06340 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
HLA-DOAP06340 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HLA-DOAP06340 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.64■■□□□ 1.06
HLA-DOAP06340 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms