Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM13O60858 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM13O60858 AC008040.2-201ENST00000461049 708 ntBASIC18.16■□□□□ 0.5
TRIM13O60858 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM13O60858 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM13O60858 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM13O60858 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM13O60858 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TRIM13O60858 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TRIM13O60858 AL031985.4-201ENST00000642138 673 ntBASIC18.16■□□□□ 0.5
TRIM13O60858 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM13O60858 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
TRIM13O60858 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM13O60858 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM13O60858 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM13O60858 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM13O60858 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TRIM13O60858 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
TRIM13O60858 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM13O60858 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM13O60858 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM13O60858 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM13O60858 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM13O60858 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.15■□□□□ 0.5
TRIM13O60858 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 AL353807.1-201ENST00000427475 662 ntBASIC18.15■□□□□ 0.5
TRIM13O60858 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TRIM13O60858 FAM207BP-201ENST00000447172 505 ntBASIC18.15■□□□□ 0.5
TRIM13O60858 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM13O60858 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.15■□□□□ 0.5
TRIM13O60858 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.15■□□□□ 0.5
TRIM13O60858 AC026271.3-201ENST00000571884 352 ntBASIC18.15■□□□□ 0.5
TRIM13O60858 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 OR6D1P-202ENST00000641007 5290 ntBASIC18.15■□□□□ 0.5
TRIM13O60858 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TRIM13O60858 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TRIM13O60858 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM13O60858 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM13O60858 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM13O60858 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
TRIM13O60858 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM13O60858 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM13O60858 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM13O60858 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 AL096828.2-201ENST00000567259 1965 ntBASIC18.14■□□□□ 0.49
TRIM13O60858 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM13O60858 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
TRIM13O60858 AC090192.1-201ENST00000517740 490 ntBASIC18.14■□□□□ 0.49
TRIM13O60858 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM13O60858 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.14■□□□□ 0.49
TRIM13O60858 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TRIM13O60858 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
TRIM13O60858 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.14■□□□□ 0.49
TRIM13O60858 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
TRIM13O60858 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
TRIM13O60858 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.14■□□□□ 0.49
TRIM13O60858 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM13O60858 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM13O60858 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM13O60858 GMCL1P1-201ENST00000463439 1581 ntBASIC18.13■□□□□ 0.49
TRIM13O60858 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM13O60858 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM13O60858 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM13O60858 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
TRIM13O60858 MIR564-202ENST00000385049 94 ntBASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms