Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 AL512625.2-201ENST00000417533 625 ntBASIC13.11□□□□□ -0.31
LINC01549A6NIU2 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 AC110285.6-201ENST00000617652 491 ntBASIC13.11□□□□□ -0.31
LINC01549A6NIU2 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 MTMR9LP-203ENST00000426597 1545 ntBASIC13.11□□□□□ -0.31
LINC01549A6NIU2 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 PXK-206ENST00000463280 2825 ntTSL 2 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01549A6NIU2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 LTF-203ENST00000426532 2494 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.1□□□□□ -0.31
LINC01549A6NIU2 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 GGT1-206ENST00000404223 952 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 AC010980.2-201ENST00000587099 1412 ntBASIC13.1□□□□□ -0.31
LINC01549A6NIU2 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01549A6NIU2 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 HYI-206ENST00000372434 1025 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01549A6NIU2 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms