Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CLCF1Q9UBD9 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLCF1Q9UBD9 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLCF1Q9UBD9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CLCF1Q9UBD9 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.3■■□□□ 1.16
CLCF1Q9UBD9 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CLCF1Q9UBD9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CLCF1Q9UBD9 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CLCF1Q9UBD9 MOB2-207ENST00000614710 705 ntTSL 5 BASIC22.29■■□□□ 1.16
CLCF1Q9UBD9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CLCF1Q9UBD9 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CLCF1Q9UBD9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CLCF1Q9UBD9 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CLCF1Q9UBD9 AL359258.2-201ENST00000564063 1566 ntBASIC22.29■■□□□ 1.16
CLCF1Q9UBD9 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC22.28■■□□□ 1.16
CLCF1Q9UBD9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.28■■□□□ 1.16
CLCF1Q9UBD9 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLCF1Q9UBD9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLCF1Q9UBD9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.27■■□□□ 1.16
CLCF1Q9UBD9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.27■■□□□ 1.16
CLCF1Q9UBD9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CLCF1Q9UBD9 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CLCF1Q9UBD9 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLCF1Q9UBD9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLCF1Q9UBD9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLCF1Q9UBD9 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CLCF1Q9UBD9 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLCF1Q9UBD9 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
CLCF1Q9UBD9 AC139426.1-201ENST00000568218 2529 ntBASIC22.25■■□□□ 1.15
CLCF1Q9UBD9 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC22.25■■□□□ 1.15
CLCF1Q9UBD9 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CLCF1Q9UBD9 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC22.25■■□□□ 1.15
CLCF1Q9UBD9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CLCF1Q9UBD9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
CLCF1Q9UBD9 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CLCF1Q9UBD9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CLCF1Q9UBD9 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.24■■□□□ 1.15
CLCF1Q9UBD9 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
CLCF1Q9UBD9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC22.23■■□□□ 1.15
CLCF1Q9UBD9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CLCF1Q9UBD9 NTF6A-201ENST00000591175 560 ntBASIC22.23■■□□□ 1.15
CLCF1Q9UBD9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
CLCF1Q9UBD9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
CLCF1Q9UBD9 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CLCF1Q9UBD9 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CLCF1Q9UBD9 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CLCF1Q9UBD9 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC22.22■■□□□ 1.15
CLCF1Q9UBD9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
CLCF1Q9UBD9 DRD5P2-201ENST00000421395 2012 ntBASIC22.21■■□□□ 1.15
CLCF1Q9UBD9 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLCF1Q9UBD9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.21■■□□□ 1.15
CLCF1Q9UBD9 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC22.2■■□□□ 1.14
CLCF1Q9UBD9 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLCF1Q9UBD9 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLCF1Q9UBD9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CLCF1Q9UBD9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.2■■□□□ 1.14
CLCF1Q9UBD9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLCF1Q9UBD9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.19■■□□□ 1.14
CLCF1Q9UBD9 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CLCF1Q9UBD9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.19■■□□□ 1.14
CLCF1Q9UBD9 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC22.19■■□□□ 1.14
CLCF1Q9UBD9 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CLCF1Q9UBD9 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC22.18■■□□□ 1.14
CLCF1Q9UBD9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CLCF1Q9UBD9 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CLCF1Q9UBD9 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
CLCF1Q9UBD9 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CLCF1Q9UBD9 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
CLCF1Q9UBD9 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.17■■□□□ 1.14
CLCF1Q9UBD9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22.17■■□□□ 1.14
CLCF1Q9UBD9 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.17■■□□□ 1.14
CLCF1Q9UBD9 U85056.1-201ENST00000616429 682 ntBASIC22.17■■□□□ 1.14
CLCF1Q9UBD9 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CLCF1Q9UBD9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CLCF1Q9UBD9 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CLCF1Q9UBD9 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.16■■□□□ 1.14
CLCF1Q9UBD9 AC007029.1-201ENST00000604183 313 ntBASIC22.16■■□□□ 1.14
CLCF1Q9UBD9 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CLCF1Q9UBD9 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC22.15■■□□□ 1.14
CLCF1Q9UBD9 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
CLCF1Q9UBD9 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CLCF1Q9UBD9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CLCF1Q9UBD9 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.14■■□□□ 1.13
CLCF1Q9UBD9 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CLCF1Q9UBD9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CLCF1Q9UBD9 AC025884.2-201ENST00000553429 711 ntBASIC22.14■■□□□ 1.13
CLCF1Q9UBD9 SMPD5-203ENST00000639008 1464 ntBASIC22.14■■□□□ 1.13
CLCF1Q9UBD9 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLCF1Q9UBD9 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
CLCF1Q9UBD9 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLCF1Q9UBD9 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.13■■□□□ 1.13
CLCF1Q9UBD9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.13■■□□□ 1.13
CLCF1Q9UBD9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLCF1Q9UBD9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLCF1Q9UBD9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.13■■□□□ 1.13
CLCF1Q9UBD9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
CLCF1Q9UBD9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CLCF1Q9UBD9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.12■■□□□ 1.13
CLCF1Q9UBD9 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CLCF1Q9UBD9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms