Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.97■■□□□ 1.75
DDX56Q9NY93 LINC01971-201ENST00000617888 1048 ntBASIC25.97■■□□□ 1.75
DDX56Q9NY93 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
DDX56Q9NY93 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC25.96■■□□□ 1.75
DDX56Q9NY93 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
DDX56Q9NY93 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
DDX56Q9NY93 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.95■■□□□ 1.75
DDX56Q9NY93 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
DDX56Q9NY93 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.95■■□□□ 1.74
DDX56Q9NY93 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.95■■□□□ 1.74
DDX56Q9NY93 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC25.94■■□□□ 1.74
DDX56Q9NY93 AL449106.1-201ENST00000608517 1980 ntBASIC25.94■■□□□ 1.74
DDX56Q9NY93 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
DDX56Q9NY93 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
DDX56Q9NY93 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
DDX56Q9NY93 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.93■■□□□ 1.74
DDX56Q9NY93 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
DDX56Q9NY93 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.93■■□□□ 1.74
DDX56Q9NY93 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
DDX56Q9NY93 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
DDX56Q9NY93 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
DDX56Q9NY93 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.91■■□□□ 1.74
DDX56Q9NY93 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.91■■□□□ 1.74
DDX56Q9NY93 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.9■■□□□ 1.74
DDX56Q9NY93 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.9■■□□□ 1.74
DDX56Q9NY93 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
DDX56Q9NY93 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
DDX56Q9NY93 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
DDX56Q9NY93 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
DDX56Q9NY93 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.89■■□□□ 1.74
DDX56Q9NY93 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.89■■□□□ 1.73
DDX56Q9NY93 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
DDX56Q9NY93 WHAMMP3-201ENST00000611636 1609 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.88■■□□□ 1.73
DDX56Q9NY93 DUX4L13-201ENST00000554103 1267 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 DUX4L15-201ENST00000611059 1267 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 DUX4L23-201ENST00000615195 1269 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 DUX4L24-201ENST00000617576 1269 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 DUX4L22-201ENST00000618238 1269 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 DUX4L20-201ENST00000619712 1269 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 DUX4L21-201ENST00000622058 1269 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 DUX4L10-201ENST00000622460 1267 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 DUX4L25-201ENST00000624915 1269 ntBASIC25.88■■□□□ 1.73
DDX56Q9NY93 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
DDX56Q9NY93 AP004609.3-201ENST00000610705 1884 ntBASIC25.87■■□□□ 1.73
DDX56Q9NY93 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX56Q9NY93 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX56Q9NY93 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.87■■□□□ 1.73
DDX56Q9NY93 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.86■■□□□ 1.73
DDX56Q9NY93 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
DDX56Q9NY93 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.86■■□□□ 1.73
DDX56Q9NY93 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.86■■□□□ 1.73
DDX56Q9NY93 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.86■■□□□ 1.73
DDX56Q9NY93 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.85■■□□□ 1.73
DDX56Q9NY93 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
DDX56Q9NY93 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
DDX56Q9NY93 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
DDX56Q9NY93 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
DDX56Q9NY93 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
DDX56Q9NY93 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.84■■□□□ 1.73
DDX56Q9NY93 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
DDX56Q9NY93 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
DDX56Q9NY93 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
DDX56Q9NY93 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.83■■□□□ 1.73
DDX56Q9NY93 DUX4L11-201ENST00000611504 1267 ntBASIC25.82■■□□□ 1.72
DDX56Q9NY93 DUX4L12-201ENST00000614593 1267 ntBASIC25.82■■□□□ 1.72
DDX56Q9NY93 DUX4L14-201ENST00000621227 1267 ntBASIC25.82■■□□□ 1.72
DDX56Q9NY93 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.82■■□□□ 1.72
DDX56Q9NY93 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
DDX56Q9NY93 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
DDX56Q9NY93 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
DDX56Q9NY93 AC142472.1-201ENST00000612013 1741 ntBASIC25.81■■□□□ 1.72
DDX56Q9NY93 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
DDX56Q9NY93 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.81■■□□□ 1.72
DDX56Q9NY93 AC091060.1-201ENST00000623524 1766 ntBASIC25.81■■□□□ 1.72
DDX56Q9NY93 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
DDX56Q9NY93 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.8■■□□□ 1.72
DDX56Q9NY93 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
DDX56Q9NY93 AC008813.1-201ENST00000536597 885 ntBASIC25.8■■□□□ 1.72
DDX56Q9NY93 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.8■■□□□ 1.72
DDX56Q9NY93 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.8■■□□□ 1.72
DDX56Q9NY93 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
DDX56Q9NY93 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
DDX56Q9NY93 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
DDX56Q9NY93 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
DDX56Q9NY93 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
DDX56Q9NY93 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
DDX56Q9NY93 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC25.77■■□□□ 1.72
DDX56Q9NY93 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.77■■□□□ 1.72
DDX56Q9NY93 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
DDX56Q9NY93 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
DDX56Q9NY93 ZNRF2P2-203ENST00000454624 420 ntBASIC25.76■■□□□ 1.71
DDX56Q9NY93 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.76■■□□□ 1.71
DDX56Q9NY93 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
DDX56Q9NY93 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
DDX56Q9NY93 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
DDX56Q9NY93 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.75■■□□□ 1.71
DDX56Q9NY93 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
DDX56Q9NY93 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.75■■□□□ 1.71
DDX56Q9NY93 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms