Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLRN3Q8NCR9 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.94■□□□□ 0.78
CLRN3Q8NCR9 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.94■□□□□ 0.78
CLRN3Q8NCR9 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
CLRN3Q8NCR9 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.94■□□□□ 0.78
CLRN3Q8NCR9 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.94■□□□□ 0.78
CLRN3Q8NCR9 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLRN3Q8NCR9 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLRN3Q8NCR9 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLRN3Q8NCR9 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.93■□□□□ 0.78
CLRN3Q8NCR9 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLRN3Q8NCR9 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLRN3Q8NCR9 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLRN3Q8NCR9 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CLRN3Q8NCR9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.92■□□□□ 0.78
CLRN3Q8NCR9 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.92■□□□□ 0.78
CLRN3Q8NCR9 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN3Q8NCR9 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN3Q8NCR9 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN3Q8NCR9 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN3Q8NCR9 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN3Q8NCR9 AL024507.2-201ENST00000606070 2574 ntBASIC19.91■□□□□ 0.78
CLRN3Q8NCR9 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN3Q8NCR9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN3Q8NCR9 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLRN3Q8NCR9 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CLRN3Q8NCR9 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLRN3Q8NCR9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLRN3Q8NCR9 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLRN3Q8NCR9 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CLRN3Q8NCR9 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLRN3Q8NCR9 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CLRN3Q8NCR9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CLRN3Q8NCR9 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLRN3Q8NCR9 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CLRN3Q8NCR9 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLRN3Q8NCR9 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CLRN3Q8NCR9 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC19.88■□□□□ 0.77
CLRN3Q8NCR9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLRN3Q8NCR9 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CLRN3Q8NCR9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLRN3Q8NCR9 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CLRN3Q8NCR9 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLRN3Q8NCR9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLRN3Q8NCR9 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.87■□□□□ 0.77
CLRN3Q8NCR9 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLRN3Q8NCR9 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CLRN3Q8NCR9 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLRN3Q8NCR9 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.86■□□□□ 0.77
CLRN3Q8NCR9 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.86■□□□□ 0.77
CLRN3Q8NCR9 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
CLRN3Q8NCR9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLRN3Q8NCR9 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLRN3Q8NCR9 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CLRN3Q8NCR9 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLRN3Q8NCR9 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.85■□□□□ 0.77
CLRN3Q8NCR9 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLRN3Q8NCR9 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLRN3Q8NCR9 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.84■□□□□ 0.77
CLRN3Q8NCR9 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLRN3Q8NCR9 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLRN3Q8NCR9 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLRN3Q8NCR9 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLRN3Q8NCR9 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLRN3Q8NCR9 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
CLRN3Q8NCR9 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLRN3Q8NCR9 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.83■□□□□ 0.76
CLRN3Q8NCR9 ERN1-208ENST00000606895 2068 ntBASIC19.83■□□□□ 0.76
CLRN3Q8NCR9 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLRN3Q8NCR9 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLRN3Q8NCR9 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CLRN3Q8NCR9 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.82■□□□□ 0.76
CLRN3Q8NCR9 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CLRN3Q8NCR9 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLRN3Q8NCR9 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLRN3Q8NCR9 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLRN3Q8NCR9 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.81■□□□□ 0.76
CLRN3Q8NCR9 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLRN3Q8NCR9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLRN3Q8NCR9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLRN3Q8NCR9 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLRN3Q8NCR9 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.8■□□□□ 0.76
CLRN3Q8NCR9 DUSP8P4-201ENST00000399538 1761 ntBASIC19.8■□□□□ 0.76
CLRN3Q8NCR9 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLRN3Q8NCR9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLRN3Q8NCR9 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLRN3Q8NCR9 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.8■□□□□ 0.76
CLRN3Q8NCR9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLRN3Q8NCR9 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC19.79■□□□□ 0.76
CLRN3Q8NCR9 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLRN3Q8NCR9 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLRN3Q8NCR9 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLRN3Q8NCR9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLRN3Q8NCR9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CLRN3Q8NCR9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLRN3Q8NCR9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLRN3Q8NCR9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLRN3Q8NCR9 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLRN3Q8NCR9 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CLRN3Q8NCR9 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms