Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SHFQ7M4L6 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC22.41■■□□□ 1.18
SHFQ7M4L6 MIR6090-201ENST00000622481 60 ntBASIC22.41■■□□□ 1.18
SHFQ7M4L6 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.41■■□□□ 1.18
SHFQ7M4L6 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
SHFQ7M4L6 AC020928.2-201ENST00000588717 2197 ntBASIC22.4■■□□□ 1.18
SHFQ7M4L6 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SHFQ7M4L6 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
SHFQ7M4L6 AC145676.1-201ENST00000514988 2004 ntBASIC22.39■■□□□ 1.17
SHFQ7M4L6 LINC00273-201ENST00000539813 1452 ntBASIC22.39■■□□□ 1.17
SHFQ7M4L6 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SHFQ7M4L6 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.38■■□□□ 1.17
SHFQ7M4L6 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SHFQ7M4L6 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHFQ7M4L6 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHFQ7M4L6 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHFQ7M4L6 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
SHFQ7M4L6 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHFQ7M4L6 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.37■■□□□ 1.17
SHFQ7M4L6 AP006261.1-201ENST00000584783 668 ntBASIC22.37■■□□□ 1.17
SHFQ7M4L6 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.37■■□□□ 1.17
SHFQ7M4L6 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC22.37■■□□□ 1.17
SHFQ7M4L6 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SHFQ7M4L6 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.37■■□□□ 1.17
SHFQ7M4L6 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHFQ7M4L6 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHFQ7M4L6 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHFQ7M4L6 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SHFQ7M4L6 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.35■■□□□ 1.17
SHFQ7M4L6 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC22.35■■□□□ 1.17
SHFQ7M4L6 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHFQ7M4L6 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.35■■□□□ 1.17
SHFQ7M4L6 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.34■■□□□ 1.17
SHFQ7M4L6 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHFQ7M4L6 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHFQ7M4L6 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SHFQ7M4L6 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
SHFQ7M4L6 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.34■■□□□ 1.17
SHFQ7M4L6 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SHFQ7M4L6 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHFQ7M4L6 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHFQ7M4L6 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHFQ7M4L6 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
SHFQ7M4L6 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHFQ7M4L6 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
SHFQ7M4L6 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SHFQ7M4L6 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SHFQ7M4L6 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.31■■□□□ 1.16
SHFQ7M4L6 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC22.3■■□□□ 1.16
SHFQ7M4L6 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SHFQ7M4L6 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22.3■■□□□ 1.16
SHFQ7M4L6 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHFQ7M4L6 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.29■■□□□ 1.16
SHFQ7M4L6 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
SHFQ7M4L6 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC22.29■■□□□ 1.16
SHFQ7M4L6 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHFQ7M4L6 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.28■■□□□ 1.16
SHFQ7M4L6 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHFQ7M4L6 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SHFQ7M4L6 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
SHFQ7M4L6 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SHFQ7M4L6 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SHFQ7M4L6 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SHFQ7M4L6 CIB2-204ENST00000557846 934 ntTSL 3 BASIC22.27■■□□□ 1.16
SHFQ7M4L6 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.27■■□□□ 1.16
SHFQ7M4L6 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.27■■□□□ 1.16
SHFQ7M4L6 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SHFQ7M4L6 AC092803.2-201ENST00000564287 1899 ntBASIC22.26■■□□□ 1.15
SHFQ7M4L6 AP004609.3-201ENST00000610705 1884 ntBASIC22.26■■□□□ 1.15
SHFQ7M4L6 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
SHFQ7M4L6 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
SHFQ7M4L6 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.25■■□□□ 1.15
SHFQ7M4L6 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHFQ7M4L6 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
SHFQ7M4L6 CALM3-209ENST00000597743 577 ntTSL 4 BASIC22.25■■□□□ 1.15
SHFQ7M4L6 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHFQ7M4L6 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
SHFQ7M4L6 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SHFQ7M4L6 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC22.24■■□□□ 1.15
SHFQ7M4L6 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SHFQ7M4L6 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SHFQ7M4L6 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHFQ7M4L6 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHFQ7M4L6 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHFQ7M4L6 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SHFQ7M4L6 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SHFQ7M4L6 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
SHFQ7M4L6 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHFQ7M4L6 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHFQ7M4L6 AC087741.3-201ENST00000624270 1347 ntBASIC22.23■■□□□ 1.15
SHFQ7M4L6 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.23■■□□□ 1.15
SHFQ7M4L6 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.23■■□□□ 1.15
SHFQ7M4L6 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
SHFQ7M4L6 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
SHFQ7M4L6 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SHFQ7M4L6 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SHFQ7M4L6 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC22.22■■□□□ 1.15
SHFQ7M4L6 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SHFQ7M4L6 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC22.22■■□□□ 1.15
SHFQ7M4L6 DUSP8P4-201ENST00000399538 1761 ntBASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms