Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
COL28A1Q2UY09 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL28A1Q2UY09 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL28A1Q2UY09 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL28A1Q2UY09 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.91■■□□□ 1.42
COL28A1Q2UY09 AC010980.1-201ENST00000587192 1142 ntBASIC23.91■■□□□ 1.42
COL28A1Q2UY09 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL28A1Q2UY09 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.9■■□□□ 1.42
COL28A1Q2UY09 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.9■■□□□ 1.42
COL28A1Q2UY09 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL28A1Q2UY09 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL28A1Q2UY09 MIR219A2-201ENST00000608502 1504 ntBASIC23.89■■□□□ 1.42
COL28A1Q2UY09 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL28A1Q2UY09 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL28A1Q2UY09 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.89■■□□□ 1.41
COL28A1Q2UY09 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.89■■□□□ 1.41
COL28A1Q2UY09 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL28A1Q2UY09 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
COL28A1Q2UY09 AC009831.1-201ENST00000580420 1582 ntBASIC23.89■■□□□ 1.41
COL28A1Q2UY09 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL28A1Q2UY09 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL28A1Q2UY09 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.88■■□□□ 1.41
COL28A1Q2UY09 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL28A1Q2UY09 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL28A1Q2UY09 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL28A1Q2UY09 AC025884.2-201ENST00000553429 711 ntBASIC23.88■■□□□ 1.41
COL28A1Q2UY09 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.88■■□□□ 1.41
COL28A1Q2UY09 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
COL28A1Q2UY09 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL28A1Q2UY09 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL28A1Q2UY09 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.87■■□□□ 1.41
COL28A1Q2UY09 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.87■■□□□ 1.41
COL28A1Q2UY09 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC23.87■■□□□ 1.41
COL28A1Q2UY09 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.86■■□□□ 1.41
COL28A1Q2UY09 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL28A1Q2UY09 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.86■■□□□ 1.41
COL28A1Q2UY09 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.86■■□□□ 1.41
COL28A1Q2UY09 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.86■■□□□ 1.41
COL28A1Q2UY09 AC007029.1-201ENST00000604183 313 ntBASIC23.86■■□□□ 1.41
COL28A1Q2UY09 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL28A1Q2UY09 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.86■■□□□ 1.41
COL28A1Q2UY09 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL28A1Q2UY09 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
COL28A1Q2UY09 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL28A1Q2UY09 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL28A1Q2UY09 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL28A1Q2UY09 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL28A1Q2UY09 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC23.84■■□□□ 1.41
COL28A1Q2UY09 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL28A1Q2UY09 AC110285.7-201ENST00000624417 1536 ntBASIC23.84■■□□□ 1.41
COL28A1Q2UY09 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL28A1Q2UY09 AL356441.2-201ENST00000443009 864 ntBASIC23.83■■□□□ 1.41
COL28A1Q2UY09 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
COL28A1Q2UY09 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL28A1Q2UY09 YBX1P4-201ENST00000392794 808 ntBASIC23.82■■□□□ 1.4
COL28A1Q2UY09 AC126177.7-201ENST00000547904 679 ntBASIC23.82■■□□□ 1.4
COL28A1Q2UY09 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL28A1Q2UY09 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.82■■□□□ 1.4
COL28A1Q2UY09 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL28A1Q2UY09 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL28A1Q2UY09 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL28A1Q2UY09 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL28A1Q2UY09 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL28A1Q2UY09 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL28A1Q2UY09 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL28A1Q2UY09 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC23.81■■□□□ 1.4
COL28A1Q2UY09 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.81■■□□□ 1.4
COL28A1Q2UY09 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL28A1Q2UY09 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL28A1Q2UY09 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL28A1Q2UY09 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
COL28A1Q2UY09 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL28A1Q2UY09 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL28A1Q2UY09 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.8■■□□□ 1.4
COL28A1Q2UY09 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.8■■□□□ 1.4
COL28A1Q2UY09 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL28A1Q2UY09 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL28A1Q2UY09 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.79■■□□□ 1.4
COL28A1Q2UY09 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL28A1Q2UY09 AL157400.5-201ENST00000507624 621 ntBASIC23.79■■□□□ 1.4
COL28A1Q2UY09 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL28A1Q2UY09 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL28A1Q2UY09 WHAMMP2-203ENST00000563942 1603 ntBASIC23.78■■□□□ 1.4
COL28A1Q2UY09 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
COL28A1Q2UY09 AC074183.2-201ENST00000623112 922 ntBASIC23.78■■□□□ 1.4
COL28A1Q2UY09 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL28A1Q2UY09 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL28A1Q2UY09 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL28A1Q2UY09 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL28A1Q2UY09 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.77■■□□□ 1.4
COL28A1Q2UY09 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.77■■□□□ 1.4
COL28A1Q2UY09 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
COL28A1Q2UY09 DUX4L9-201ENST00000449051 1259 ntBASIC23.76■■□□□ 1.39
COL28A1Q2UY09 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.76■■□□□ 1.39
COL28A1Q2UY09 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL28A1Q2UY09 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.76■■□□□ 1.39
COL28A1Q2UY09 AC008406.3-201ENST00000620001 1374 ntBASIC23.76■■□□□ 1.39
COL28A1Q2UY09 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
COL28A1Q2UY09 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
COL28A1Q2UY09 AC127502.1-201ENST00000399971 1502 ntBASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms