Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.8■■□□□ 1.08
CX3CR1P49238 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CX3CR1P49238 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.8■■□□□ 1.08
CX3CR1P49238 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CX3CR1P49238 AC135731.1-201ENST00000569415 2548 ntBASIC21.8■■□□□ 1.08
CX3CR1P49238 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.8■■□□□ 1.08
CX3CR1P49238 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CX3CR1P49238 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.79■■□□□ 1.08
CX3CR1P49238 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CX3CR1P49238 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CX3CR1P49238 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CX3CR1P49238 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
CX3CR1P49238 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CX3CR1P49238 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CX3CR1P49238 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.78■■□□□ 1.08
CX3CR1P49238 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CX3CR1P49238 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
CX3CR1P49238 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CX3CR1P49238 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CX3CR1P49238 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CX3CR1P49238 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CX3CR1P49238 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CX3CR1P49238 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CX3CR1P49238 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.77■■□□□ 1.07
CX3CR1P49238 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
CX3CR1P49238 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
CX3CR1P49238 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CX3CR1P49238 LINC01971-201ENST00000617888 1048 ntBASIC21.76■■□□□ 1.07
CX3CR1P49238 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CX3CR1P49238 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.76■■□□□ 1.07
CX3CR1P49238 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CX3CR1P49238 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CX3CR1P49238 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.75■■□□□ 1.07
CX3CR1P49238 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CX3CR1P49238 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CX3CR1P49238 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.74■■□□□ 1.07
CX3CR1P49238 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.74■■□□□ 1.07
CX3CR1P49238 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.74■■□□□ 1.07
CX3CR1P49238 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CX3CR1P49238 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CX3CR1P49238 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CX3CR1P49238 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CX3CR1P49238 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.73■■□□□ 1.07
CX3CR1P49238 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CX3CR1P49238 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CX3CR1P49238 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.71■■□□□ 1.07
CX3CR1P49238 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CX3CR1P49238 AL449106.1-201ENST00000608517 1980 ntBASIC21.71■■□□□ 1.07
CX3CR1P49238 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.71■■□□□ 1.07
CX3CR1P49238 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CX3CR1P49238 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
CX3CR1P49238 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CX3CR1P49238 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.7■■□□□ 1.06
CX3CR1P49238 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CX3CR1P49238 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.69■■□□□ 1.06
CX3CR1P49238 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CX3CR1P49238 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CX3CR1P49238 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CX3CR1P49238 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CX3CR1P49238 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CX3CR1P49238 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CX3CR1P49238 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CX3CR1P49238 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.68■■□□□ 1.06
CX3CR1P49238 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.68■■□□□ 1.06
CX3CR1P49238 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CX3CR1P49238 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CX3CR1P49238 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CX3CR1P49238 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CX3CR1P49238 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.67■■□□□ 1.06
CX3CR1P49238 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CX3CR1P49238 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CX3CR1P49238 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CX3CR1P49238 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.67■■□□□ 1.06
CX3CR1P49238 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CX3CR1P49238 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CX3CR1P49238 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CX3CR1P49238 DUX4L13-201ENST00000554103 1267 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 DUX4L15-201ENST00000611059 1267 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 DUX4L23-201ENST00000615195 1269 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 DUX4L24-201ENST00000617576 1269 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 DUX4L22-201ENST00000618238 1269 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 DUX4L20-201ENST00000619712 1269 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 DUX4L21-201ENST00000622058 1269 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 DUX4L10-201ENST00000622460 1267 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 DUX4L25-201ENST00000624915 1269 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.66■■□□□ 1.06
CX3CR1P49238 AP004609.3-201ENST00000610705 1884 ntBASIC21.66■■□□□ 1.06
CX3CR1P49238 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CX3CR1P49238 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.65■■□□□ 1.06
CX3CR1P49238 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.65■■□□□ 1.06
CX3CR1P49238 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.65■■□□□ 1.06
CX3CR1P49238 WHAMMP3-201ENST00000611636 1609 ntBASIC21.65■■□□□ 1.06
CX3CR1P49238 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CX3CR1P49238 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CX3CR1P49238 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CX3CR1P49238 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CX3CR1P49238 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CX3CR1P49238 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CX3CR1P49238 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CX3CR1P49238 DUX4L11-201ENST00000611504 1267 ntBASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms