Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KRT8P33-201ENST00000508125 1423 ntBASIC25.32■■□□□ 1.64
CXCL12P48061 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC25.32■■□□□ 1.64
CXCL12P48061 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CXCL12P48061 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC25.32■■□□□ 1.64
CXCL12P48061 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CXCL12P48061 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.31■■□□□ 1.64
CXCL12P48061 AC093536.1-201ENST00000569153 554 ntBASIC25.31■■□□□ 1.64
CXCL12P48061 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CXCL12P48061 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.31■■□□□ 1.64
CXCL12P48061 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.31■■□□□ 1.64
CXCL12P48061 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
CXCL12P48061 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
CXCL12P48061 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CXCL12P48061 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
CXCL12P48061 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
CXCL12P48061 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CXCL12P48061 AC139795.1-202ENST00000500444 432 ntBASIC25.29■■□□□ 1.64
CXCL12P48061 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.29■■□□□ 1.64
CXCL12P48061 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CXCL12P48061 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
CXCL12P48061 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CXCL12P48061 AP004833.2-201ENST00000532228 1454 ntBASIC25.28■■□□□ 1.64
CXCL12P48061 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC25.27■■□□□ 1.64
CXCL12P48061 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CXCL12P48061 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CXCL12P48061 YBX1P4-201ENST00000392794 808 ntBASIC25.27■■□□□ 1.64
CXCL12P48061 AC009299.2-201ENST00000482477 511 ntBASIC25.27■■□□□ 1.64
CXCL12P48061 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.27■■□□□ 1.64
CXCL12P48061 RAP2CP1-202ENST00000605179 643 ntBASIC25.27■■□□□ 1.64
CXCL12P48061 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.27■■□□□ 1.64
CXCL12P48061 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.27■■□□□ 1.64
CXCL12P48061 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.26■■□□□ 1.63
CXCL12P48061 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.26■■□□□ 1.63
CXCL12P48061 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC25.26■■□□□ 1.63
CXCL12P48061 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC25.26■■□□□ 1.63
CXCL12P48061 SPCS2P3-201ENST00000500401 656 ntBASIC25.26■■□□□ 1.63
CXCL12P48061 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CXCL12P48061 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CXCL12P48061 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
CXCL12P48061 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CXCL12P48061 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
CXCL12P48061 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CXCL12P48061 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CXCL12P48061 MTURN-203ENST00000409688 843 ntTSL 2 BASIC25.24■■□□□ 1.63
CXCL12P48061 HYI-210ENST00000486909 905 ntTSL 5 BASIC25.24■■□□□ 1.63
CXCL12P48061 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.24■■□□□ 1.63
CXCL12P48061 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.24■■□□□ 1.63
CXCL12P48061 MIR6765-201ENST00000614092 87 ntBASIC25.24■■□□□ 1.63
CXCL12P48061 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CXCL12P48061 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CXCL12P48061 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC25.23■■□□□ 1.63
CXCL12P48061 AC019069.1-201ENST00000610008 1333 ntBASIC25.22■■□□□ 1.63
CXCL12P48061 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.22■■□□□ 1.63
CXCL12P48061 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CXCL12P48061 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
CXCL12P48061 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CXCL12P48061 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
CXCL12P48061 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CXCL12P48061 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CXCL12P48061 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CXCL12P48061 BEX3-202ENST00000372634 753 ntTSL 2 BASIC25.21■■□□□ 1.63
CXCL12P48061 HES6-204ENST00000409182 863 ntTSL 2 BASIC25.21■■□□□ 1.63
CXCL12P48061 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CXCL12P48061 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CXCL12P48061 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC25.21■■□□□ 1.63
CXCL12P48061 AC131212.1-201ENST00000613771 668 ntBASIC25.21■■□□□ 1.63
CXCL12P48061 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CXCL12P48061 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.21■■□□□ 1.63
CXCL12P48061 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
CXCL12P48061 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CXCL12P48061 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.63
CXCL12P48061 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.2■■□□□ 1.63
CXCL12P48061 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC25.2■■□□□ 1.63
CXCL12P48061 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CXCL12P48061 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.2■■□□□ 1.62
CXCL12P48061 MIR3960-201ENST00000583311 91 ntBASIC25.2■■□□□ 1.62
CXCL12P48061 AC100797.4-201ENST00000631653 1827 ntBASIC25.2■■□□□ 1.62
CXCL12P48061 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CXCL12P48061 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.19■■□□□ 1.62
CXCL12P48061 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CXCL12P48061 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC25.19■■□□□ 1.62
CXCL12P48061 AC103834.1-201ENST00000520383 144 ntBASIC25.19■■□□□ 1.62
CXCL12P48061 AC018755.3-202ENST00000596210 929 ntBASIC25.19■■□□□ 1.62
CXCL12P48061 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CXCL12P48061 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC25.18■■□□□ 1.62
CXCL12P48061 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CXCL12P48061 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CXCL12P48061 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CXCL12P48061 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
CXCL12P48061 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
CXCL12P48061 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CXCL12P48061 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC25.16■■□□□ 1.62
CXCL12P48061 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.16■■□□□ 1.62
CXCL12P48061 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC25.16■■□□□ 1.62
CXCL12P48061 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC25.16■■□□□ 1.62
CXCL12P48061 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CXCL12P48061 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
CXCL12P48061 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.15■■□□□ 1.62
CXCL12P48061 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CXCL12P48061 THA1P-201ENST00000590384 1145 ntBASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms