Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.53■■■□□ 2.32
HMGB1P09429 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
HMGB1P09429 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
HMGB1P09429 CR559946.2-201ENST00000623684 991 ntBASIC29.52■■■□□ 2.32
HMGB1P09429 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
HMGB1P09429 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
HMGB1P09429 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC29.52■■■□□ 2.32
HMGB1P09429 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC29.51■■■□□ 2.32
HMGB1P09429 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC29.51■■■□□ 2.31
HMGB1P09429 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.51■■■□□ 2.31
HMGB1P09429 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC29.51■■■□□ 2.31
HMGB1P09429 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC29.51■■■□□ 2.31
HMGB1P09429 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC29.51■■■□□ 2.31
HMGB1P09429 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC29.5■■■□□ 2.31
HMGB1P09429 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.5■■■□□ 2.31
HMGB1P09429 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC29.49■■■□□ 2.31
HMGB1P09429 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
HMGB1P09429 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC29.49■■■□□ 2.31
HMGB1P09429 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
HMGB1P09429 AC148477.6-201ENST00000623746 465 ntBASIC29.49■■■□□ 2.31
HMGB1P09429 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
HMGB1P09429 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
HMGB1P09429 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
HMGB1P09429 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
HMGB1P09429 MIR3648-2-201ENST00000581792 180 ntBASIC29.48■■■□□ 2.31
HMGB1P09429 MIR3648-1-201ENST00000615959 180 ntBASIC29.48■■■□□ 2.31
HMGB1P09429 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
HMGB1P09429 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
HMGB1P09429 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC29.47■■■□□ 2.31
HMGB1P09429 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC29.46■■■□□ 2.31
HMGB1P09429 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
HMGB1P09429 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
HMGB1P09429 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.46■■■□□ 2.31
HMGB1P09429 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
HMGB1P09429 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC29.45■■■□□ 2.31
HMGB1P09429 WHAMMP3-201ENST00000611636 1609 ntBASIC29.45■■■□□ 2.31
HMGB1P09429 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC29.45■■■□□ 2.31
HMGB1P09429 AL449106.1-201ENST00000608517 1980 ntBASIC29.44■■■□□ 2.3
HMGB1P09429 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC29.44■■■□□ 2.3
HMGB1P09429 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.44■■■□□ 2.3
HMGB1P09429 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC29.44■■■□□ 2.3
HMGB1P09429 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
HMGB1P09429 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
HMGB1P09429 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
HMGB1P09429 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
HMGB1P09429 MIR219A2-201ENST00000608502 1504 ntBASIC29.43■■■□□ 2.3
HMGB1P09429 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC29.43■■■□□ 2.3
HMGB1P09429 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC29.43■■■□□ 2.3
HMGB1P09429 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
HMGB1P09429 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
HMGB1P09429 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
HMGB1P09429 CHST11-203ENST00000547956 936 ntTSL 2 BASIC29.42■■■□□ 2.3
HMGB1P09429 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
HMGB1P09429 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
HMGB1P09429 MIR7108-201ENST00000614319 87 ntBASIC29.41■■■□□ 2.3
HMGB1P09429 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC29.41■■■□□ 2.3
HMGB1P09429 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
HMGB1P09429 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
HMGB1P09429 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
HMGB1P09429 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
HMGB1P09429 HLA-V-202ENST00000446817 847 ntBASIC29.4■■■□□ 2.3
HMGB1P09429 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC29.4■■■□□ 2.3
HMGB1P09429 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC29.4■■■□□ 2.3
HMGB1P09429 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC29.39■■■□□ 2.3
HMGB1P09429 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
HMGB1P09429 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
HMGB1P09429 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC29.39■■■□□ 2.3
HMGB1P09429 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC29.39■■■□□ 2.3
HMGB1P09429 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
HMGB1P09429 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC29.38■■■□□ 2.29
HMGB1P09429 PKM-203ENST00000389093 2279 ntTSL 5 BASIC29.38■■■□□ 2.29
HMGB1P09429 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC29.38■■■□□ 2.29
HMGB1P09429 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC29.37■■■□□ 2.29
HMGB1P09429 AC016575.1-201ENST00000607026 382 ntBASIC29.37■■■□□ 2.29
HMGB1P09429 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC29.36■■■□□ 2.29
HMGB1P09429 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
HMGB1P09429 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
HMGB1P09429 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC29.36■■■□□ 2.29
HMGB1P09429 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
HMGB1P09429 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
HMGB1P09429 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
HMGB1P09429 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC29.35■■■□□ 2.29
HMGB1P09429 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
HMGB1P09429 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
HMGB1P09429 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
HMGB1P09429 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
HMGB1P09429 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
HMGB1P09429 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC29.33■■■□□ 2.29
HMGB1P09429 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
HMGB1P09429 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
HMGB1P09429 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
HMGB1P09429 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
HMGB1P09429 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
HMGB1P09429 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.32■■■□□ 2.28
HMGB1P09429 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC29.32■■■□□ 2.28
HMGB1P09429 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC29.32■■■□□ 2.28
HMGB1P09429 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
HMGB1P09429 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
HMGB1P09429 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC29.31■■■□□ 2.28
HMGB1P09429 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms