Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MT-ND4P03905 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.52■■□□□ 1.04
MT-ND4P03905 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.52■■□□□ 1.04
MT-ND4P03905 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
MT-ND4P03905 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
MT-ND4P03905 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MT-ND4P03905 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
MT-ND4P03905 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
MT-ND4P03905 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
MT-ND4P03905 AC005559.1-201ENST00000589661 871 ntBASIC21.51■■□□□ 1.03
MT-ND4P03905 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
MT-ND4P03905 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.51■■□□□ 1.03
MT-ND4P03905 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
MT-ND4P03905 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MT-ND4P03905 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
MT-ND4P03905 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.5■■□□□ 1.03
MT-ND4P03905 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.5■■□□□ 1.03
MT-ND4P03905 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MT-ND4P03905 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MT-ND4P03905 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MT-ND4P03905 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.49■■□□□ 1.03
MT-ND4P03905 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MT-ND4P03905 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.48■■□□□ 1.03
MT-ND4P03905 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MT-ND4P03905 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MT-ND4P03905 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.48■■□□□ 1.03
MT-ND4P03905 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MT-ND4P03905 AC100797.4-201ENST00000631653 1827 ntBASIC21.48■■□□□ 1.03
MT-ND4P03905 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MT-ND4P03905 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.47■■□□□ 1.03
MT-ND4P03905 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
MT-ND4P03905 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MT-ND4P03905 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MT-ND4P03905 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MT-ND4P03905 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MT-ND4P03905 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.46■■□□□ 1.03
MT-ND4P03905 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.46■■□□□ 1.03
MT-ND4P03905 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.46■■□□□ 1.03
MT-ND4P03905 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MT-ND4P03905 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
MT-ND4P03905 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
MT-ND4P03905 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
MT-ND4P03905 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
MT-ND4P03905 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MT-ND4P03905 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MT-ND4P03905 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MT-ND4P03905 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MT-ND4P03905 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
MT-ND4P03905 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.44■■□□□ 1.02
MT-ND4P03905 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MT-ND4P03905 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.44■■□□□ 1.02
MT-ND4P03905 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
MT-ND4P03905 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MT-ND4P03905 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.43■■□□□ 1.02
MT-ND4P03905 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.43■■□□□ 1.02
MT-ND4P03905 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MT-ND4P03905 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MT-ND4P03905 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MT-ND4P03905 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
MT-ND4P03905 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MT-ND4P03905 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.41■■□□□ 1.02
MT-ND4P03905 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MT-ND4P03905 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MT-ND4P03905 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MT-ND4P03905 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.4■■□□□ 1.02
MT-ND4P03905 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.4■■□□□ 1.02
MT-ND4P03905 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MT-ND4P03905 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MT-ND4P03905 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MT-ND4P03905 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.39■■□□□ 1.01
MT-ND4P03905 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MT-ND4P03905 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
MT-ND4P03905 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
MT-ND4P03905 AC108673.1-201ENST00000510422 1159 ntBASIC21.38■■□□□ 1.01
MT-ND4P03905 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.38■■□□□ 1.01
MT-ND4P03905 DUSP8P4-201ENST00000399538 1761 ntBASIC21.38■■□□□ 1.01
MT-ND4P03905 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MT-ND4P03905 AP002414.2-202ENST00000590929 1450 ntBASIC21.38■■□□□ 1.01
MT-ND4P03905 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.37■■□□□ 1.01
MT-ND4P03905 DUX4L28-201ENST00000623687 678 ntBASIC21.37■■□□□ 1.01
MT-ND4P03905 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MT-ND4P03905 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.37■■□□□ 1.01
MT-ND4P03905 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MT-ND4P03905 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MT-ND4P03905 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MT-ND4P03905 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
MT-ND4P03905 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MT-ND4P03905 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MT-ND4P03905 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
MT-ND4P03905 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MT-ND4P03905 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MT-ND4P03905 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.36■■□□□ 1.01
MT-ND4P03905 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MT-ND4P03905 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MT-ND4P03905 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
MT-ND4P03905 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.35■■□□□ 1.01
MT-ND4P03905 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
MT-ND4P03905 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MT-ND4P03905 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
MT-ND4P03905 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms