Protein–RNA interactions for Protein: O15041

SEMA3E, Semaphorin-3E, humanhuman

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3EO15041 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SEMA3EO15041 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SEMA3EO15041 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
SEMA3EO15041 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SEMA3EO15041 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC30.41■■■□□ 2.46
SEMA3EO15041 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SEMA3EO15041 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.41■■■□□ 2.46
SEMA3EO15041 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SEMA3EO15041 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SEMA3EO15041 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SEMA3EO15041 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SEMA3EO15041 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC30.39■■■□□ 2.46
SEMA3EO15041 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SEMA3EO15041 HYI-213ENST00000583037 1322 ntTSL 5 BASIC30.39■■■□□ 2.46
SEMA3EO15041 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC30.38■■■□□ 2.45
SEMA3EO15041 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SEMA3EO15041 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC30.36■■■□□ 2.45
SEMA3EO15041 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC30.35■■■□□ 2.45
SEMA3EO15041 REST-210ENST00000638187 1334 ntTSL 5 BASIC30.35■■■□□ 2.45
SEMA3EO15041 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
SEMA3EO15041 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
SEMA3EO15041 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
SEMA3EO15041 U85056.1-201ENST00000616429 682 ntBASIC30.34■■■□□ 2.45
SEMA3EO15041 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
SEMA3EO15041 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.32■■■□□ 2.44
SEMA3EO15041 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SEMA3EO15041 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC30.32■■■□□ 2.44
SEMA3EO15041 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SEMA3EO15041 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SEMA3EO15041 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
SEMA3EO15041 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
SEMA3EO15041 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC30.31■■■□□ 2.44
SEMA3EO15041 AC007029.1-201ENST00000604183 313 ntBASIC30.31■■■□□ 2.44
SEMA3EO15041 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
SEMA3EO15041 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SEMA3EO15041 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SEMA3EO15041 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SEMA3EO15041 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SEMA3EO15041 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
SEMA3EO15041 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC30.3■■■□□ 2.44
SEMA3EO15041 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
SEMA3EO15041 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SEMA3EO15041 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
SEMA3EO15041 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
SEMA3EO15041 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC30.29■■■□□ 2.44
SEMA3EO15041 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SEMA3EO15041 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
SEMA3EO15041 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SEMA3EO15041 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SEMA3EO15041 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SEMA3EO15041 SMPD5-203ENST00000639008 1464 ntBASIC30.28■■■□□ 2.44
SEMA3EO15041 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC30.28■■■□□ 2.44
SEMA3EO15041 AC025884.2-201ENST00000553429 711 ntBASIC30.28■■■□□ 2.44
SEMA3EO15041 AC012354.3-201ENST00000623734 483 ntBASIC30.28■■■□□ 2.44
SEMA3EO15041 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SEMA3EO15041 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
SEMA3EO15041 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SEMA3EO15041 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SEMA3EO15041 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30.26■■■□□ 2.43
SEMA3EO15041 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SEMA3EO15041 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC30.26■■■□□ 2.43
SEMA3EO15041 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SEMA3EO15041 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC30.25■■■□□ 2.43
SEMA3EO15041 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SEMA3EO15041 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
SEMA3EO15041 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC30.25■■■□□ 2.43
SEMA3EO15041 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.24■■■□□ 2.43
SEMA3EO15041 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.24■■■□□ 2.43
SEMA3EO15041 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC30.24■■■□□ 2.43
SEMA3EO15041 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SEMA3EO15041 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SEMA3EO15041 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
SEMA3EO15041 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC30.22■■■□□ 2.43
SEMA3EO15041 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
SEMA3EO15041 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SEMA3EO15041 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
SEMA3EO15041 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.43
SEMA3EO15041 KRT18P60-201ENST00000312876 1297 ntBASIC30.2■■■□□ 2.43
SEMA3EO15041 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
SEMA3EO15041 GFER-205ENST00000569451 517 ntTSL 5 BASIC30.2■■■□□ 2.43
SEMA3EO15041 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
SEMA3EO15041 DRD5P2-201ENST00000421395 2012 ntBASIC30.19■■■□□ 2.42
SEMA3EO15041 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC30.19■■■□□ 2.42
SEMA3EO15041 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
SEMA3EO15041 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC30.19■■■□□ 2.42
SEMA3EO15041 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.19■■■□□ 2.42
SEMA3EO15041 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
SEMA3EO15041 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SEMA3EO15041 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SEMA3EO15041 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.17■■■□□ 2.42
SEMA3EO15041 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
SEMA3EO15041 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC30.17■■■□□ 2.42
SEMA3EO15041 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.16■■■□□ 2.42
SEMA3EO15041 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
SEMA3EO15041 WHAMMP3-201ENST00000611636 1609 ntBASIC30.15■■■□□ 2.42
SEMA3EO15041 PFN2-211ENST00000489155 636 ntTSL 4 BASIC30.15■■■□□ 2.42
SEMA3EO15041 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
SEMA3EO15041 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SEMA3EO15041 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC30.14■■■□□ 2.42
SEMA3EO15041 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.14■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms