Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
LRRC53A6NM62 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC26.87■■□□□ 1.89
LRRC53A6NM62 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.87■■□□□ 1.89
LRRC53A6NM62 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.87■■□□□ 1.89
LRRC53A6NM62 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.87■■□□□ 1.89
LRRC53A6NM62 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
LRRC53A6NM62 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.86■■□□□ 1.89
LRRC53A6NM62 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
LRRC53A6NM62 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
LRRC53A6NM62 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
LRRC53A6NM62 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
LRRC53A6NM62 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
LRRC53A6NM62 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
LRRC53A6NM62 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
LRRC53A6NM62 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
LRRC53A6NM62 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
LRRC53A6NM62 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
LRRC53A6NM62 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
LRRC53A6NM62 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
LRRC53A6NM62 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
LRRC53A6NM62 AP004609.3-201ENST00000610705 1884 ntBASIC26.84■■□□□ 1.89
LRRC53A6NM62 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.89
LRRC53A6NM62 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.83■■□□□ 1.89
LRRC53A6NM62 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
LRRC53A6NM62 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
LRRC53A6NM62 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
LRRC53A6NM62 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
LRRC53A6NM62 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
LRRC53A6NM62 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26.81■■□□□ 1.88
LRRC53A6NM62 DUX4L29-201ENST00000425409 679 ntBASIC26.81■■□□□ 1.88
LRRC53A6NM62 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.81■■□□□ 1.88
LRRC53A6NM62 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC26.8■■□□□ 1.88
LRRC53A6NM62 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
LRRC53A6NM62 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
LRRC53A6NM62 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.8■■□□□ 1.88
LRRC53A6NM62 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
LRRC53A6NM62 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
LRRC53A6NM62 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
LRRC53A6NM62 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.78■■□□□ 1.88
LRRC53A6NM62 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.77■■□□□ 1.88
LRRC53A6NM62 AC145676.1-201ENST00000514988 2004 ntBASIC26.77■■□□□ 1.88
LRRC53A6NM62 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
LRRC53A6NM62 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.77■■□□□ 1.88
LRRC53A6NM62 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.77■■□□□ 1.88
LRRC53A6NM62 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC26.77■■□□□ 1.88
LRRC53A6NM62 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.77■■□□□ 1.88
LRRC53A6NM62 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
LRRC53A6NM62 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC26.76■■□□□ 1.88
LRRC53A6NM62 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.76■■□□□ 1.88
LRRC53A6NM62 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
LRRC53A6NM62 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.76■■□□□ 1.87
LRRC53A6NM62 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
LRRC53A6NM62 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
LRRC53A6NM62 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
LRRC53A6NM62 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.74■■□□□ 1.87
LRRC53A6NM62 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.74■■□□□ 1.87
LRRC53A6NM62 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.73■■□□□ 1.87
LRRC53A6NM62 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
LRRC53A6NM62 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.73■■□□□ 1.87
LRRC53A6NM62 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
LRRC53A6NM62 WHAMMP3-201ENST00000611636 1609 ntBASIC26.72■■□□□ 1.87
LRRC53A6NM62 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.72■■□□□ 1.87
LRRC53A6NM62 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
LRRC53A6NM62 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
LRRC53A6NM62 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.71■■□□□ 1.87
LRRC53A6NM62 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
LRRC53A6NM62 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
LRRC53A6NM62 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
LRRC53A6NM62 AC142472.1-201ENST00000612013 1741 ntBASIC26.7■■□□□ 1.86
LRRC53A6NM62 AC092803.2-201ENST00000564287 1899 ntBASIC26.7■■□□□ 1.86
LRRC53A6NM62 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
LRRC53A6NM62 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.7■■□□□ 1.86
LRRC53A6NM62 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.69■■□□□ 1.86
LRRC53A6NM62 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.69■■□□□ 1.86
LRRC53A6NM62 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
LRRC53A6NM62 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
LRRC53A6NM62 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
LRRC53A6NM62 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.69■■□□□ 1.86
LRRC53A6NM62 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
LRRC53A6NM62 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
LRRC53A6NM62 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.68■■□□□ 1.86
LRRC53A6NM62 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
LRRC53A6NM62 AC135731.1-201ENST00000569415 2548 ntBASIC26.67■■□□□ 1.86
LRRC53A6NM62 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.67■■□□□ 1.86
LRRC53A6NM62 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.66■■□□□ 1.86
LRRC53A6NM62 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.66■■□□□ 1.86
LRRC53A6NM62 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
LRRC53A6NM62 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
LRRC53A6NM62 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.65■■□□□ 1.86
LRRC53A6NM62 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
LRRC53A6NM62 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
LRRC53A6NM62 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
LRRC53A6NM62 DUSP8P4-201ENST00000399538 1761 ntBASIC26.64■■□□□ 1.86
LRRC53A6NM62 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
LRRC53A6NM62 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.64■■□□□ 1.86
LRRC53A6NM62 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
LRRC53A6NM62 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.85
LRRC53A6NM62 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
LRRC53A6NM62 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
LRRC53A6NM62 RPS2P35-201ENST00000443417 897 ntBASIC26.63■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms