Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
TRAV4A0A0B4J268 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
TRAV4A0A0B4J268 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
TRAV4A0A0B4J268 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV4A0A0B4J268 MLEC-202ENST00000412616 841 ntTSL 3 BASIC17.83■□□□□ 0.44
TRAV4A0A0B4J268 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC17.83■□□□□ 0.44
TRAV4A0A0B4J268 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
TRAV4A0A0B4J268 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
TRAV4A0A0B4J268 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV4A0A0B4J268 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV4A0A0B4J268 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV4A0A0B4J268 CHML-204ENST00000638121 920 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV4A0A0B4J268 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
TRAV4A0A0B4J268 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV4A0A0B4J268 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV4A0A0B4J268 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV4A0A0B4J268 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV4A0A0B4J268 RPS2-210ENST00000530225 765 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV4A0A0B4J268 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
TRAV4A0A0B4J268 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV4A0A0B4J268 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TRAV4A0A0B4J268 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
TRAV4A0A0B4J268 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
TRAV4A0A0B4J268 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV4A0A0B4J268 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC17.79■□□□□ 0.44
TRAV4A0A0B4J268 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV4A0A0B4J268 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV4A0A0B4J268 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC17.78■□□□□ 0.44
TRAV4A0A0B4J268 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC17.78■□□□□ 0.44
TRAV4A0A0B4J268 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 DUX4L13-201ENST00000554103 1267 ntBASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 DUX4L15-201ENST00000611059 1267 ntBASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 DUX4L23-201ENST00000615195 1269 ntBASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 DUX4L24-201ENST00000617576 1269 ntBASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 DUX4L22-201ENST00000618238 1269 ntBASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 DUX4L20-201ENST00000619712 1269 ntBASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 DUX4L21-201ENST00000622058 1269 ntBASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 DUX4L10-201ENST00000622460 1267 ntBASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 DUX4L25-201ENST00000624915 1269 ntBASIC17.77■□□□□ 0.44
TRAV4A0A0B4J268 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC17.77■□□□□ 0.43
TRAV4A0A0B4J268 CREM-210ENST00000374721 2020 ntTSL 5 BASIC17.77■□□□□ 0.43
TRAV4A0A0B4J268 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV4A0A0B4J268 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
TRAV4A0A0B4J268 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC17.76■□□□□ 0.43
TRAV4A0A0B4J268 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV4A0A0B4J268 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC17.76■□□□□ 0.43
TRAV4A0A0B4J268 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV4A0A0B4J268 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV4A0A0B4J268 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV4A0A0B4J268 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV4A0A0B4J268 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV4A0A0B4J268 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV4A0A0B4J268 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV4A0A0B4J268 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TRAV4A0A0B4J268 DUX4L11-201ENST00000611504 1267 ntBASIC17.74■□□□□ 0.43
TRAV4A0A0B4J268 DUX4L12-201ENST00000614593 1267 ntBASIC17.74■□□□□ 0.43
TRAV4A0A0B4J268 DUX4L14-201ENST00000621227 1267 ntBASIC17.74■□□□□ 0.43
TRAV4A0A0B4J268 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV4A0A0B4J268 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV4A0A0B4J268 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV4A0A0B4J268 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAV4A0A0B4J268 CHST11-202ENST00000546689 756 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV4A0A0B4J268 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV4A0A0B4J268 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV4A0A0B4J268 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 ZNRF2P2-203ENST00000454624 420 ntBASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 AC008813.1-201ENST00000536597 885 ntBASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 PKM-203ENST00000389093 2279 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV4A0A0B4J268 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV4A0A0B4J268 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
TRAV4A0A0B4J268 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.42
TRAV4A0A0B4J268 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TRAV4A0A0B4J268 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV4A0A0B4J268 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV4A0A0B4J268 WHAMMP3-201ENST00000611636 1609 ntBASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms