Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
TRAV39A0A0B4J263 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
TRAV39A0A0B4J263 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV39A0A0B4J263 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV39A0A0B4J263 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV39A0A0B4J263 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TRAV39A0A0B4J263 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV39A0A0B4J263 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV39A0A0B4J263 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV39A0A0B4J263 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.8■□□□□ 0.92
TRAV39A0A0B4J263 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.8■□□□□ 0.92
TRAV39A0A0B4J263 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.8■□□□□ 0.92
TRAV39A0A0B4J263 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV39A0A0B4J263 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV39A0A0B4J263 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.8■□□□□ 0.92
TRAV39A0A0B4J263 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV39A0A0B4J263 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV39A0A0B4J263 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.79■□□□□ 0.92
TRAV39A0A0B4J263 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.79■□□□□ 0.92
TRAV39A0A0B4J263 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
TRAV39A0A0B4J263 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV39A0A0B4J263 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV39A0A0B4J263 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV39A0A0B4J263 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.78■□□□□ 0.92
TRAV39A0A0B4J263 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV39A0A0B4J263 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.78■□□□□ 0.92
TRAV39A0A0B4J263 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV39A0A0B4J263 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.78■□□□□ 0.92
TRAV39A0A0B4J263 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
TRAV39A0A0B4J263 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV39A0A0B4J263 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV39A0A0B4J263 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV39A0A0B4J263 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV39A0A0B4J263 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV39A0A0B4J263 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
TRAV39A0A0B4J263 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRAV39A0A0B4J263 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TRAV39A0A0B4J263 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TRAV39A0A0B4J263 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.76■□□□□ 0.91
TRAV39A0A0B4J263 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAV39A0A0B4J263 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.75■□□□□ 0.91
TRAV39A0A0B4J263 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.75■□□□□ 0.91
TRAV39A0A0B4J263 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
TRAV39A0A0B4J263 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRAV39A0A0B4J263 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAV39A0A0B4J263 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.74■□□□□ 0.91
TRAV39A0A0B4J263 AL449106.1-201ENST00000608517 1980 ntBASIC20.74■□□□□ 0.91
TRAV39A0A0B4J263 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAV39A0A0B4J263 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV39A0A0B4J263 LINC01971-201ENST00000617888 1048 ntBASIC20.73■□□□□ 0.91
TRAV39A0A0B4J263 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRAV39A0A0B4J263 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.73■□□□□ 0.91
TRAV39A0A0B4J263 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV39A0A0B4J263 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV39A0A0B4J263 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV39A0A0B4J263 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
TRAV39A0A0B4J263 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.72■□□□□ 0.91
TRAV39A0A0B4J263 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.71■□□□□ 0.91
TRAV39A0A0B4J263 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRAV39A0A0B4J263 ZNRF2P2-203ENST00000454624 420 ntBASIC20.7■□□□□ 0.9
TRAV39A0A0B4J263 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.7■□□□□ 0.9
TRAV39A0A0B4J263 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
TRAV39A0A0B4J263 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.69■□□□□ 0.9
TRAV39A0A0B4J263 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.69■□□□□ 0.9
TRAV39A0A0B4J263 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV39A0A0B4J263 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV39A0A0B4J263 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.69■□□□□ 0.9
TRAV39A0A0B4J263 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.69■□□□□ 0.9
TRAV39A0A0B4J263 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRAV39A0A0B4J263 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV39A0A0B4J263 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV39A0A0B4J263 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L11-201ENST00000611504 1267 ntBASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L12-201ENST00000614593 1267 ntBASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L14-201ENST00000621227 1267 ntBASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 AP004609.3-201ENST00000610705 1884 ntBASIC20.68■□□□□ 0.9
TRAV39A0A0B4J263 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L13-201ENST00000554103 1267 ntBASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L15-201ENST00000611059 1267 ntBASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L23-201ENST00000615195 1269 ntBASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L24-201ENST00000617576 1269 ntBASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L22-201ENST00000618238 1269 ntBASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L20-201ENST00000619712 1269 ntBASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L21-201ENST00000622058 1269 ntBASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L10-201ENST00000622460 1267 ntBASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 DUX4L25-201ENST00000624915 1269 ntBASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.67■□□□□ 0.9
TRAV39A0A0B4J263 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.66■□□□□ 0.9
TRAV39A0A0B4J263 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV39A0A0B4J263 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV39A0A0B4J263 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms