Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 MIR1238-201ENST00000408483 83 ntBASIC14.94□□□□□ -0.02
FOXA2Q9Y261 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA2Q9Y261 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 CD276-201ENST00000318424 2738 ntTSL 5 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 PCDHB18P-201ENST00000524813 2368 ntBASIC14.93□□□□□ -0.02
FOXA2Q9Y261 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 AC135776.1-201ENST00000319817 2481 ntBASIC14.93□□□□□ -0.02
FOXA2Q9Y261 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA2Q9Y261 AC008764.6-201ENST00000595909 2069 ntBASIC14.93□□□□□ -0.02
FOXA2Q9Y261 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 KRT18P41-201ENST00000518924 1277 ntBASIC14.92□□□□□ -0.02
FOXA2Q9Y261 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 FITM1-202ENST00000559294 800 ntBASIC14.92□□□□□ -0.02
FOXA2Q9Y261 GLDC-219ENST00000640208 420 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 MYLKP1-201ENST00000509077 1580 ntBASIC14.92□□□□□ -0.02
FOXA2Q9Y261 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA2Q9Y261 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms