Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
MMP28Q9H239 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC16.29■□□□□ 0.2
MMP28Q9H239 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
MMP28Q9H239 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.29■□□□□ 0.2
MMP28Q9H239 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.29■□□□□ 0.2
MMP28Q9H239 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.29■□□□□ 0.2
MMP28Q9H239 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.28■□□□□ 0.2
MMP28Q9H239 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.28■□□□□ 0.2
MMP28Q9H239 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
MMP28Q9H239 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
MMP28Q9H239 GATS-209ENST00000454084 1030 ntTSL 3 BASIC16.28■□□□□ 0.2
MMP28Q9H239 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 AC083880.1-201ENST00000608266 535 ntBASIC16.28■□□□□ 0.2
MMP28Q9H239 HLA-B-256ENST00000639848 1089 ntBASIC16.28■□□□□ 0.2
MMP28Q9H239 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.28■□□□□ 0.2
MMP28Q9H239 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
MMP28Q9H239 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
MMP28Q9H239 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.28■□□□□ 0.2
MMP28Q9H239 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.28■□□□□ 0.2
MMP28Q9H239 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.28■□□□□ 0.2
MMP28Q9H239 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MMP28Q9H239 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
MMP28Q9H239 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.27■□□□□ 0.2
MMP28Q9H239 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.27■□□□□ 0.2
MMP28Q9H239 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
MMP28Q9H239 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC16.27■□□□□ 0.2
MMP28Q9H239 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.27■□□□□ 0.2
MMP28Q9H239 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC16.27■□□□□ 0.2
MMP28Q9H239 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.27■□□□□ 0.2
MMP28Q9H239 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 AC083906.6-201ENST00000641366 219 ntBASIC16.27■□□□□ 0.2
MMP28Q9H239 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MMP28Q9H239 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
MMP28Q9H239 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MMP28Q9H239 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MMP28Q9H239 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
MMP28Q9H239 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
MMP28Q9H239 AL391005.1-201ENST00000623953 2435 ntBASIC16.27■□□□□ 0.19
MMP28Q9H239 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MMP28Q9H239 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
MMP28Q9H239 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MMP28Q9H239 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MMP28Q9H239 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MMP28Q9H239 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
MMP28Q9H239 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.27■□□□□ 0.19
MMP28Q9H239 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
MMP28Q9H239 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
MMP28Q9H239 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.26■□□□□ 0.19
MMP28Q9H239 PP12613-201ENST00000424958 2230 ntBASIC16.26■□□□□ 0.19
MMP28Q9H239 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC16.26■□□□□ 0.19
MMP28Q9H239 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.26■□□□□ 0.19
MMP28Q9H239 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.26■□□□□ 0.19
MMP28Q9H239 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 POU5F1P3-201ENST00000428824 1078 ntBASIC16.26■□□□□ 0.19
MMP28Q9H239 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.26■□□□□ 0.19
MMP28Q9H239 AC005829.2-201ENST00000571422 1056 ntBASIC16.26■□□□□ 0.19
MMP28Q9H239 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC16.26■□□□□ 0.19
MMP28Q9H239 AC060766.5-201ENST00000590539 871 ntBASIC16.26■□□□□ 0.19
MMP28Q9H239 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
MMP28Q9H239 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
MMP28Q9H239 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms