Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 AL353719.1-201ENST00000566847 864 ntBASIC17.67■□□□□ 0.42
VMP1Q96GC9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VMP1Q96GC9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.67■□□□□ 0.42
VMP1Q96GC9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 AC092338.2-201ENST00000568827 1415 ntBASIC17.66■□□□□ 0.42
VMP1Q96GC9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 AC007663.1-201ENST00000438948 1240 ntBASIC17.66■□□□□ 0.42
VMP1Q96GC9 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 TEX21P-204ENST00000641479 1693 ntBASIC17.66■□□□□ 0.42
VMP1Q96GC9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VMP1Q96GC9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VMP1Q96GC9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 INGX-201ENST00000359239 846 ntBASIC17.65■□□□□ 0.42
VMP1Q96GC9 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
VMP1Q96GC9 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.65■□□□□ 0.42
VMP1Q96GC9 HMGA1P5-201ENST00000412453 271 ntBASIC17.65■□□□□ 0.42
VMP1Q96GC9 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.65■□□□□ 0.42
VMP1Q96GC9 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VMP1Q96GC9 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.65■□□□□ 0.42
VMP1Q96GC9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.65■□□□□ 0.42
VMP1Q96GC9 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.65■□□□□ 0.42
VMP1Q96GC9 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
VMP1Q96GC9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
VMP1Q96GC9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.64■□□□□ 0.42
VMP1Q96GC9 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VMP1Q96GC9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms