Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CPNE4Q96A23 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.56■□□□□ 0.24
CPNE4Q96A23 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CPNE4Q96A23 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CPNE4Q96A23 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.56■□□□□ 0.24
CPNE4Q96A23 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.56■□□□□ 0.24
CPNE4Q96A23 RASA4DP-201ENST00000460726 1199 ntBASIC16.56■□□□□ 0.24
CPNE4Q96A23 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.56■□□□□ 0.24
CPNE4Q96A23 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.56■□□□□ 0.24
CPNE4Q96A23 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CPNE4Q96A23 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
CPNE4Q96A23 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.56■□□□□ 0.24
CPNE4Q96A23 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.56■□□□□ 0.24
CPNE4Q96A23 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CPNE4Q96A23 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CPNE4Q96A23 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CPNE4Q96A23 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CPNE4Q96A23 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CPNE4Q96A23 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.56■□□□□ 0.24
CPNE4Q96A23 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.55■□□□□ 0.24
CPNE4Q96A23 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.55■□□□□ 0.24
CPNE4Q96A23 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
CPNE4Q96A23 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.55■□□□□ 0.24
CPNE4Q96A23 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CPNE4Q96A23 MYLKP1-201ENST00000509077 1580 ntBASIC16.55■□□□□ 0.24
CPNE4Q96A23 CROCCP3-202ENST00000420820 1947 ntBASIC16.55■□□□□ 0.24
CPNE4Q96A23 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 NTF6B-201ENST00000591913 560 ntBASIC16.54■□□□□ 0.24
CPNE4Q96A23 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.54■□□□□ 0.24
CPNE4Q96A23 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE4Q96A23 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CPNE4Q96A23 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CPNE4Q96A23 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CPNE4Q96A23 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.53■□□□□ 0.24
CPNE4Q96A23 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.53■□□□□ 0.24
CPNE4Q96A23 SPDYE15P-201ENST00000424157 909 ntBASIC16.53■□□□□ 0.24
CPNE4Q96A23 AC112907.2-201ENST00000448639 330 ntBASIC16.53■□□□□ 0.24
CPNE4Q96A23 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.53■□□□□ 0.24
CPNE4Q96A23 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.53■□□□□ 0.24
CPNE4Q96A23 AC087388.1-201ENST00000571370 1112 ntBASIC16.53■□□□□ 0.24
CPNE4Q96A23 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE4Q96A23 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
CPNE4Q96A23 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.53■□□□□ 0.24
CPNE4Q96A23 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms